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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95109 (21 seq.)
>W1711629241
MPOT01000022
Bacillota
Tepidanaerobacter sp. EBM-38 [MPOT]
743
658
-
Tyr
GTA
[ENA]
¡û
>W1711629262
MPOT01000084
Bacillota
Tepidanaerobacter sp. EBM-38 [MPOT]
24161
24246
+
Tyr
GTA
[ENA]
¡û
>WENV170561394
CZCA01007998
[CZCA] anaerobic digester metagenome; anaerobic digester
1924
1839
-
Tyr
GTA
[ENA]
¡û
>WENV170561485
CZCA01011166
[CZCA] anaerobic digester metagenome; anaerobic digester
319
234
-
Tyr
GTA
[ENA]
¡û
>WENV170562674
CZCB01004454
[CZCB] anaerobic digester metagenome; anaerobic digester
271
186
-
Tyr
GTA
[ENA]
¡û
>WENV170562933
CZCB01007521
[CZCB] anaerobic digester metagenome; anaerobic digester
7365
7450
+
Tyr
GTA
[ENA]
¡û
>WENV170676008
LDZR01000003
[LDZR] terrestrial metagenome; oil reservoir sample K2
6248
6163
-
Tyr
GTA
[ENA]
¡û
>WENV170686070
LFRM01124547
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
7313
7398
+
Tyr
GTA
[ENA]
¡û
>WENV170687423
LFRM01192231
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
270
185
-
Tyr
GTA
[ENA]
¡û
>WENV170719020
LSQX01099267
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
530
445
-
Tyr
GTA
[ENA]
¡û
>WENV170723847
LSQX01283207
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
121631
121546
-
Tyr
GTA
[ENA]
¡û
>WENV170724039
LSQX01290490
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
51929
51844
-
Tyr
GTA
[ENA]
¡û
>WENV170969294
MTKW01024936
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1349
1434
+
Tyr
GTA
[ENA]
¡û
>C211023795
AP024619
Bacillota
Gelria sp. Kuro-4 [AP024619]
1842692
1842777
+
Tyr
GTA
-
¡û
>C211118825
CP059066
Bacillota
Koleobacter methoxysyntrophicus NRmbB1 [CP059066]
2560210
2560125
-
Tyr
GTA
-
¡û
>C11122583
CP002728
Bacillota
Tepidanaerobacter acetatoxydans Re1 [CP002728]
2266473
2266388
-
Tyr
GTA
[Ensembl]
¡û
>C11122595
CP002728
Bacillota
Tepidanaerobacter acetatoxydans Re1 [CP002728]
1385171
1385086
-
Tyr
GTA
[Ensembl]
¡û
>C131020965
HF563609
Bacillota
Tepidanaerobacter acetatoxydans Re1 [HF563609]
2267692
2267607
-
Tyr
GTA
-
¡û
>C131020976
HF563609
Bacillota
Tepidanaerobacter acetatoxydans Re1 [HF563609]
1386024
1385939
-
Tyr
GTA
-
¡û
>W1610605894
LFSJ01000064
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
7313
7398
+
Tyr
GTA
[ENA]
¡û
>W1710727181
LFSJ01000064
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
7313
7398
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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