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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95720 (54 seq.)
>W1710875553
LMOM01000012
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
18729
18645
-
Leu
CAG
[ENA]
¡û
>W1711708265
MSTI01000158
Deinococcota
Deinococcus marmoris [MSTI]
8316
8400
+
Leu
CAG
[ENA]
¡û
>W1711743934
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
1046285
1046201
-
Leu
CAG
[ENA]
¡û
>W1712080670
NHMK01000014
Deinococcota
Deinococcus indicus [NHMK]
29347
29263
-
Leu
CAG
[ENA]
¡û
>W131104570
APCS01000025
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
17019
16935
-
Leu
CAG
[ENA]
¡û
>W131178669
ARLS01000053
Deinococcota
Deinococcus apachensis DSM 19763 [ARLS]
159019
158935
-
Leu
CAG
[ENA]
¡û
>W131213875
ATTJ01000001
Deinococcota
Deinococcus ficus 2009 [ATTJ]
899269
899353
+
Leu
CAG
[ENA]
¡û
>W131237109
AUMV01000011
Deinococcota
Deinococcus ficus DSM 19119 [AUMV]
105650
105734
+
Leu
CAG
[ENA]
¡û
>C007739
CP000359
Deinococcota
Deinococcus geothermalis DSM 11300 [CP000359]
2277386
2277302
-
Leu
CAG
[Ensembl]
¡û
>C007952
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2118461
2118377
-
Leu
CAG
[Ensembl]
¡û
>WENV180232135
OBCO01000134
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
100489
100573
+
Leu
CAG
[ENA]
¢þ
>WENV180233114
OBCP01000130
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
100489
100573
+
Leu
CAG
[ENA]
¢þ
>WENV180569719
OCLR01000346
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
33704
33788
+
Leu
CAG
[ENA]
¢þ
>WENV180570754
OCLS01000490
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
8223
8139
-
Leu
CAG
[ENA]
¢þ
>WENV180571481
OCLT01000132
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
100489
100573
+
Leu
CAG
[ENA]
¢þ
>WENV180573734
OCLW01000132
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
100489
100573
+
Leu
CAG
[ENA]
¢þ
>WENV180639791
OCRL01000134
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
100489
100573
+
Leu
CAG
[ENA]
¢þ
>WENV180640723
OCRM01000132
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
100489
100573
+
Leu
CAG
[ENA]
¢þ
>W141154759
AXLL01000008
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
22655
22739
+
Leu
CAG
[ENA]
¡û
>W141169910
AXWT01000016
Deinococcota
Deinococcus murrayi DSM 11303 [AXWT]
50303
50387
+
Leu
CAG
[ENA]
¡û
>C181134282
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
225991
226075
+
Leu
CAG
-
¡û
>C181185100
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
2908648
2908564
-
Leu
CAG
-
¡û
>C181196447
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
145301
145385
+
Leu
CAG
-
¡û
>C191018478
CP021081
Deinococcota
Deinococcus ficus CC-FR2-10 [CP021081]
250752
250668
-
Leu
CAG
-
¡û
>C191121206
CP034183
Deinococcota
Deinococcus psychrotolerans S14-83 [CP034183, CP034184]
2000579
2000663
+
Leu
CAG
-
¡û
>W141561460
JHYL01000006
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
100759
100843
+
Leu
CAG
[ENA]
¡û
>W09102017
AAHE01000008
Deinococcota
Deinococcus geothermalis DSM 11300 [AAHE]
114554
114470
-
Leu
CAG
[ENA]
¡û
>W141702056
JMLF01000004
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
100854
100938
+
Leu
CAG
[ENA]
¡û
>W141711935
JMQF01000020
Deinococcota
Deinococcus sp. RL [JMQF]
44949
45033
+
Leu
CAG
[ENA]
¡û
>W141731143
JNIV01000106
Deinococcota
Deinococcus marmoris DSM 12784 [JNIV]
6652
6568
-
Leu
CAG
[ENA]
¡û
>W141731186
JNIW01000050
Deinococcota
Deinococcus frigens DSM 12807 [JNIW]
2662
2578
-
Leu
CAG
[ENA]
¡û
>W141821130
JQNI01000002
Deinococcota
Deinococcus sp. YIM 77859 [JQNI]
2058667
2058583
-
Leu
CAG
[ENA]
¡û
>C09103905
CP001114
Deinococcota
Deinococcus deserti VCD115 [CP001114]
2428585
2428501
-
Leu
CAG
[Ensembl]
¡û
>W1911597465
PNOR01000004
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
136343
136427
+
Leu
CAG
[ENA]
¡û
>W1911788267
QYCQ01000070
Deinococcota
Deinococcus sp. RM [QYCQ]
1595
1679
+
Leu
CAG
[ENA]
¡û
>W1911802495
QYUJ01000014
Deinococcota
Deinococcus cavernae K2S05-167 [QYUJ]
1251777
1251861
+
Leu
CAG
[ENA]
¡û
>W1810003549
BFAG01000011
Deinococcota
Deinococcus aerius TR0125 [BFAG]
30498
30582
+
Leu
CAG
[ENA]
¡û
>W1810238352
PPPD01000001
Deinococcota
Deinococcus koreensis SJW1-2 [PPPD]
1044434
1044350
-
Leu
CAG
[ENA]
¡û
>W1810423349
PYSV01000012
Deinococcota
Deinococcus arcticus OD32 [PYSV]
41843
41927
+
Leu
CAG
[ENA]
¡û
>W1810671587
QJSX01000002
Deinococcota
Deinococcus yavapaiensis KR-236 DSM 18048 [QJSX]
348388
348304
-
Leu
CAG
[ENA]
¡û
>C151063661
CP010028
Deinococcota
Deinococcus radiopugnans DY59 [CP010028]
1257985
1257901
-
Leu
CAG
[Ensembl]
¡û
>C151081896
CP011389
Deinococcota
Deinococcus soli [ex Cha et al. 2016] N5 [CP011389]
2281648
2281732
+
Leu
CAG
[Ensembl]
¡û
>C10105354
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2118461
2118377
-
Leu
CAG
[Ensembl]
¡û
>C11107281
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2118461
2118377
-
Leu
CAG
[Ensembl]
¡û
>C121002065
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
2650841
2650925
+
Leu
CAG
[Ensembl]
¡û
>C161061605
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
2860667
2860583
-
Leu
CAG
[Ensembl]
¡û
>C161082956
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
606307
606391
+
Leu
CAG
-
¡û
>W1610061591
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
2848116
2848032
-
Leu
CAG
[ENA]
¡û
>W1610638986
LIYN01000206
Deinococcota
Deinococcus sp. UR1 [LIYN]
9395
9311
-
Leu
CAG
[ENA]
¡û
>W1610737899
LMOM01000012
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
18729
18645
-
Leu
CAG
[ENA]
¡û
>W1710059256
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
2848116
2848032
-
Leu
CAG
[ENA]
¡û
>W1710542258
FNZA01000002
Deinococcota
Deinococcus reticulitermitis [FNZA]
161467
161551
+
Leu
CAG
[ENA]
¡û
>W1710605319
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
2750845
2750761
-
Leu
CAG
[ENA]
¡û
>W1710774880
LIYN01000206
Deinococcota
Deinococcus sp. UR1 [LIYN]
9395
9311
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK