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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95909 (26 seq.)
>W1711129666
LUUF01000084
Gammaproteobacteria
Methylomonas methanica [LUUF]
28877
28793
-
Leu
GAG
[ENA]
¡û
>W1711129707
LUUG01000100
Gammaproteobacteria
Methylomonas methanica [LUUG]
7616
7532
-
Leu
GAG
[ENA]
¡û
>W1711129751
LUUH01000077
Gammaproteobacteria
Methylomonas methanica [LUUH]
168635
168551
-
Leu
GAG
[ENA]
¡û
>W1711129808
LUUJ01000011
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
46194
46278
+
Leu
GAG
[ENA]
¡û
>W1711129859
LUUK01000046
Gammaproteobacteria
Methylomonas koyamae [LUUK]
7859
7775
-
Leu
GAG
[ENA]
¡û
>W1711129903
LUUL01000066
Gammaproteobacteria
Methylomonas koyamae [LUUL]
2829
2745
-
Leu
GAG
[ENA]
¡û
>W131155780
AQOV01000002
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
851181
851265
+
Leu
GAG
[ENA]
¡û
>W1711494867
MKMC01000045
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
9088
9004
-
Leu
GAG
[ENA]
¡û
>W141219926
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
3367126
3367210
+
Leu
GAG
[ENA]
¡û
>WENV170577503
FSSH01000091
[FSSH] freshwater metagenome; drinking water
5146
5062
-
Leu
GAG
[ENA]
¢þ
>C181088658
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
1097283
1097367
+
Leu
GAG
-
¡û
>C191105436
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
3976892
3976808
-
Leu
GAG
-
¡û
>W141733686
JNLB01000001
Gammaproteobacteria
Methylomonas sp. LW13 [JNLB]
610414
610330
-
Leu
GAG
[ENA]
¡û
>W1810154940
PIZT01000068
Gammaproteobacteria
Methylomonas sp. Kb3 [PIZT]
310166
310250
+
Leu
GAG
[ENA]
¡û
>C11114752
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
3624577
3624493
-
Leu
GAG
[Ensembl]
¡û
>W1511397865
JTDD01000020
Gammaproteobacteria
Methylomonas denitrificans FJG1 [JTDD]
28902
28818
-
Leu
GAG
[ENA]
¡û
>C161072108
CP014360
Gammaproteobacteria
Methylomonas sp. DH-1 [CP014360]
1076942
1077026
+
Leu
GAG
[Ensembl]
¡û
>C161072464
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
1018137
1018053
-
Leu
GAG
[Ensembl]
¡û
>W1610046495
BBCK01000109
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
702
618
-
Leu
GAG
[ENA]
¡û
>W1610940739
LUUF01000084
Gammaproteobacteria
Methylomonas methanica [LUUF]
28877
28793
-
Leu
GAG
[ENA]
¡û
>W1610940780
LUUG01000100
Gammaproteobacteria
Methylomonas methanica [LUUG]
7616
7532
-
Leu
GAG
[ENA]
¡û
>W1610940824
LUUH01000077
Gammaproteobacteria
Methylomonas methanica [LUUH]
168635
168551
-
Leu
GAG
[ENA]
¡û
>W1610940881
LUUJ01000011
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
46194
46278
+
Leu
GAG
[ENA]
¡û
>W1610940932
LUUK01000046
Gammaproteobacteria
Methylomonas koyamae [LUUK]
7859
7775
-
Leu
GAG
[ENA]
¡û
>W1610940976
LUUL01000066
Gammaproteobacteria
Methylomonas koyamae [LUUL]
2829
2745
-
Leu
GAG
[ENA]
¡û
>W1710043291
BBCK01000109
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
702
618
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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