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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95946 (98 seq.)
>W1710785177
LJHQ01000011
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
119512
119596
+
Tyr
GTA
[ENA]
¡û
>W1710858023
LMAR01000033
Alphaproteobacteria
Bosea thiooxidans [LMAR]
35552
35468
-
Tyr
GTA
[ENA]
¡û
>W1710869496
LMJT01000041
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
40264
40180
-
Tyr
GTA
[ENA]
¡û
>W1710869520
LMJU01000012
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
385168
385252
+
Tyr
GTA
[ENA]
¡û
>W1710869646
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
293882
293966
+
Tyr
GTA
[ENA]
¡û
>W1710879521
LMRT01000013
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
693468
693552
+
Tyr
GTA
[ENA]
¡û
>W1710893371
LNER01000452
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
13814
13898
+
Tyr
GTA
[ENA]
¡û
>W1711072955
LSIB01000144
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
45736
45820
+
Tyr
GTA
[ENA]
¡û
>W1711073114
LSIG01000007
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
7201
7117
-
Tyr
GTA
[ENA]
¡û
>W1711073292
LSIK01000129
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
37284
37368
+
Tyr
GTA
[ENA]
¡û
>W1711073821
LSIY01000228
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
3613
3697
+
Tyr
GTA
[ENA]
¡û
>W1711074496
LSJP01000072
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
3907
3991
+
Tyr
GTA
[ENA]
¡û
>W1711074618
LSJR01000443
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
1528
1612
+
Tyr
GTA
[ENA]
¡û
>W1711074743
LSJU01001251
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
1525
1609
+
Tyr
GTA
[ENA]
¡û
>W1711074758
LSJV01000045
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
3907
3991
+
Tyr
GTA
[ENA]
¡û
>W1711074861
LSJX01000200
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
3613
3697
+
Tyr
GTA
[ENA]
¡û
>W1711075561
LSKN01000086
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
2227
2143
-
Tyr
GTA
[ENA]
¡û
>W1711385462
MEEG01000045
Alphaproteobacteria
Methylobacterium sp. SCN 67-24 [MEEG]
7734
7818
+
Tyr
GTA
[ENA]
¡û
>W1711502391
MKSQ01000019
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
56202
56286
+
Tyr
GTA
[ENA]
¡û
>W1711505833
MKVW01000006
Alphaproteobacteria
Rhizobiales bacterium 62-17 [MKVW]
335881
335965
+
Tyr
GTA
[ENA]
¡û
>W131175700
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
1719297
1719213
-
Tyr
GTA
[ENA]
¡û
>C171049981
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
3395172
3395088
-
Tyr
GTA
-
¡û
>C171057753
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
5083938
5083854
-
Tyr
GTA
-
¡û
>WENV180017911
FSXV01000060
[FSXV] metagenome; soil
18577
18661
+
Tyr
GTA
[ENA]
¢þ
>WENV180017914
FSXV01000078
[FSXV] metagenome; soil
19107
19023
-
Tyr
GTA
[ENA]
¢þ
>WENV180018716
FTAI01000046
[FTAI] metagenome; soil
200
116
-
Tyr
GTA
[ENA]
¢þ
>WENV181168033
OEIU01134831
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
601
517
-
Tyr
GTA
[ENA]
¢þ
>WENV181227329
OFDN01006624
[OFDN] hot springs metagenome; Water
1751
1835
+
Tyr
GTA
[ENA]
¢þ
>WENV181414962
OGCL01002569
[OGCL] hot springs metagenome; Hot spring water
9558
9642
+
Tyr
GTA
[ENA]
¢þ
>C08006462
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
3475032
3474951
-
Tyr
GTA
[Ensembl]
¡û
>WENV183741294
PJUF01078087
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
109
25
-
Tyr
GTA
[ENA]
¢þ
>WENV170010255
APMI01011666
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1191
1275
+
Tyr
GTA
[ENA]
¢þ
>WENV170011503
APMI01070058
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2451
2367
-
Tyr
GTA
[ENA]
¢þ
>WENV170576941
FRDC01002340
[FRDC] freshwater metagenome; water
49092
49008
-
Tyr
GTA
[ENA]
¢þ
>WENV170577803
FSSH01001365
[FSSH] freshwater metagenome; drinking water
4756
4840
+
Tyr
GTA
[ENA]
¢þ
>WENV170680769
LFEF01019935
[LFEF] freshwater metagenome; waterbloom
25
109
+
Tyr
GTA
[ENA]
¢þ
>WENV170708950
LNFM01000042
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
262855
262771
-
Tyr
GTA
[ENA]
¢þ
>WENV170709741
LNFM01000652
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
475
559
+
Tyr
GTA
[ENA]
¢þ
>WENV170710250
LNFM01001381
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
83708
83792
+
Tyr
GTA
[ENA]
¢þ
>WENV170711541
LNFM01005762
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
13401
13317
-
Tyr
GTA
[ENA]
¢þ
>WENV170713016
LNFM01022446
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3331
3247
-
Tyr
GTA
[ENA]
¢þ
>WENV171003198
NNBT01002345
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
11935
12019
+
Tyr
GTA
[ENA]
¢þ
>WENV171003694
NNBV01000276
[NNBV] plant metagenome; symbiotic tissue sample KVS11
53760
53844
+
Tyr
GTA
[ENA]
¢þ
>C181063191
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
2242628
2242712
+
Tyr
GTA
-
¡û
>C191005673
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
1458801
1458885
+
Tyr
GTA
-
¡û
>C191014036
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
1936894
1936810
-
Tyr
GTA
-
¡û
>W141805309
JPKG01000040
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
85851
85767
-
Tyr
GTA
[ENA]
¡û
>W141815796
JQJJ01000008
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
89959
89875
-
Tyr
GTA
[ENA]
¡û
>W1910635386
LNCQ01000006
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
96290
96374
+
Tyr
GTA
[ENA]
¡û
>W1910840140
MZXT01000016
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
399430
399346
-
Tyr
GTA
[ENA]
¡û
>W1910840183
MZXU01000017
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
2515472
2515388
-
Tyr
GTA
[ENA]
¡û
>W1910847640
NBDP01000005
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
196226
196142
-
Tyr
GTA
[ENA]
¡û
>W1911653523
QDFX01000011
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
137643
137559
-
Tyr
GTA
[ENA]
¡û
>W1810251999
PQFZ01000003
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
247795
247879
+
Tyr
GTA
[ENA]
¡û
>W1810463338
PZZL01000013
Alphaproteobacteria
Phreatobacter oligotrophus DSM 25521 [PZZL]
40706
40790
+
Tyr
GTA
[ENA]
¡û
>W1810463360
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
4243944
4244028
+
Tyr
GTA
[ENA]
¡û
>W1810676921
QKMI01000022
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
6429
6345
-
Tyr
GTA
[ENA]
¡û
>W1810783303
QQTO01000019
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
617523
617607
+
Tyr
GTA
[ENA]
¡û
>W1810783331
QQTP01000001
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
617523
617607
+
Tyr
GTA
[ENA]
¡û
>W1511353012
JROW01000116
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
33022
32938
-
Tyr
GTA
[ENA]
¡û
>W1511400880
JTHF01000046
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
3424
3340
-
Tyr
GTA
[ENA]
¡û
>W1511400881
JTHF01000046
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
3190
3106
-
Tyr
GTA
[ENA]
¡û
>W11150259
AEVM01000051
Alphaproteobacteria
Methylocystis sp. ATCC 49242 [AEVM]
2493
2409
-
Tyr
GTA
[ENA]
¡û
>C161070701
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
1895515
1895431
-
Tyr
GTA
[Ensembl]
¡û
>W1610550604
JXTJ01000001
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
167838
167922
+
Tyr
GTA
[ENA]
¡û
>W1610617190
LGSZ01000078
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
116634
116718
+
Tyr
GTA
[ENA]
¡û
>W1610648983
LJHQ01000011
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
119512
119596
+
Tyr
GTA
[ENA]
¡û
>W1610720369
LMAR01000033
Alphaproteobacteria
Bosea thiooxidans [LMAR]
35552
35468
-
Tyr
GTA
[ENA]
¡û
>W1610731842
LMJT01000041
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
40264
40180
-
Tyr
GTA
[ENA]
¡û
>W1610731866
LMJU01000012
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
385168
385252
+
Tyr
GTA
[ENA]
¡û
>W1610731992
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
293882
293966
+
Tyr
GTA
[ENA]
¡û
>W1610741867
LMRT01000013
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
693468
693552
+
Tyr
GTA
[ENA]
¡û
>W1610753637
LNER01000452
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
13814
13898
+
Tyr
GTA
[ENA]
¡û
>W1610912215
LSIB01000144
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
45736
45820
+
Tyr
GTA
[ENA]
¡û
>W1610912419
LSIG01000007
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
7201
7117
-
Tyr
GTA
[ENA]
¡û
>W1610912597
LSIK01000129
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
37284
37368
+
Tyr
GTA
[ENA]
¡û
>W1610913126
LSIY01000228
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
3613
3697
+
Tyr
GTA
[ENA]
¡û
>W1610913801
LSJP01000072
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
3907
3991
+
Tyr
GTA
[ENA]
¡û
>W1610913923
LSJR01000443
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
1528
1612
+
Tyr
GTA
[ENA]
¡û
>W1610914048
LSJU01001251
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
1525
1609
+
Tyr
GTA
[ENA]
¡û
>W1610914063
LSJV01000045
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
3907
3991
+
Tyr
GTA
[ENA]
¡û
>W1610914166
LSJX01000200
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
3613
3697
+
Tyr
GTA
[ENA]
¡û
>W1610914866
LSKN01000086
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
2227
2143
-
Tyr
GTA
[ENA]
¡û
>W1710064185
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
4202073
4202157
+
Tyr
GTA
[ENA]
¡û
>W1710515690
FNBZ01000002
Alphaproteobacteria
Bosea robiniae [FNBZ]
636696
636780
+
Tyr
GTA
[ENA]
¡û
>W1710515708
FNBZ01000007
Alphaproteobacteria
Bosea robiniae [FNBZ]
146029
146113
+
Tyr
GTA
[ENA]
¡û
>W1710535116
FNSI01000001
Alphaproteobacteria
Beijerinckia sp. 28-YEA-48 [FNSI]
508430
508514
+
Tyr
GTA
[ENA]
¡û
>W1710535711
FNSS01000001
Alphaproteobacteria
Rhizobiales bacterium GAS188 [FNSS]
1930694
1930610
-
Tyr
GTA
[ENA]
¡û
>W1710538943
FNUY01000003
Alphaproteobacteria
Bosea lathyri [FNUY]
537241
537325
+
Tyr
GTA
[ENA]
¡û
>W1710544009
FOAN01000001
Alphaproteobacteria
Bosea lupini [FOAN]
788011
787927
-
Tyr
GTA
[ENA]
¡û
>W1710556990
FOKP01000008
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
166060
165976
-
Tyr
GTA
[ENA]
¡û
>W1710560658
FONO01000005
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
171493
171577
+
Tyr
GTA
[ENA]
¡û
>W1710560659
FONO01000005
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
171727
171811
+
Tyr
GTA
[ENA]
¡û
>W1710564925
FOQV01000006
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
274713
274797
+
Tyr
GTA
[ENA]
¡û
>W1710596445
FTMO01000005
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
168047
167963
-
Tyr
GTA
[ENA]
¡û
>W1710603294
FUYX01000013
Alphaproteobacteria
Bosea thiooxidans [FUYX]
123822
123906
+
Tyr
GTA
[ENA]
¡û
>W1710660439
JXTJ01000001
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
167838
167922
+
Tyr
GTA
[ENA]
¡û
>W1710742804
LGSZ01000078
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
116634
116718
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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