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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95951 (203 seq.)
>W1710808916
LKDZ01000013
Betaproteobacteria
Variovorax boronicumulans [LKDZ]
186379
186463
+
Leu
CAA
[ENA]
¡û
>W1710822425
LKUW01000026
Betaproteobacteria
Paracidovorax citrulli [LKUW]
358
274
-
Leu
CAA
[ENA]
¡û
>W1710860145
LMCQ01000020
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
190839
190755
-
Leu
CAA
[ENA]
¡û
>W1710861747
LMDW01000001
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
470533
470449
-
Leu
CAA
[ENA]
¡û
>W1710862463
LMEK01000001
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
234017
233933
-
Leu
CAA
[ENA]
¡û
>W1710873404
LMMT01000009
Betaproteobacteria
Pseudorhodoferax sp. Leaf265 [LMMT]
140653
140737
+
Leu
CAA
[ENA]
¡û
>W1710873509
LMMV01000012
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
44800
44716
-
Leu
CAA
[ENA]
¡û
>W1710873761
LMNA01000029
Betaproteobacteria
Pseudorhodoferax sp. Leaf274 [LMNA]
41690
41606
-
Leu
CAA
[ENA]
¡û
>W1710906973
LNOL01000006
Betaproteobacteria
Alcaligenes faecalis [LNOL]
94929
95013
+
Leu
CAA
[ENA]
¡û
>W1711123829
LUJJ01000020
Betaproteobacteria
Variovorax boronicumulans [LUJJ]
44340
44256
-
Leu
CAA
[ENA]
¡û
>W1711143340
LVHG01000002
Betaproteobacteria
Variovorax paradoxus [LVHG]
77987
77903
-
Leu
CAA
[ENA]
¡û
>W1711167218
LVWD01000004
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
217285
217201
-
Leu
CAA
[ENA]
¡û
>W1711386492
MEFM01000014
Betaproteobacteria
Variovorax sp. SCN 67-85 [MEFM]
86554
86638
+
Leu
CAA
[ENA]
¡û
>W1711387470
MEGR01000008
Betaproteobacteria
Variovorax sp. SCN 67-20 [MEGR]
86554
86638
+
Leu
CAA
[ENA]
¡û
>W1711394989
MESQ01000002
Betaproteobacteria
Burkholderiales bacterium RIFOXYD12_FULL_59_19 [MESQ]
4
88
+
Leu
CAA
[ENA]
¡û
>W1711504583
MKUS01000006
Betaproteobacteria
Burkholderiales bacterium 68-12 [MKUS]
128285
128369
+
Leu
CAA
[ENA]
¡û
>W1711506637
MKWO01000046
Betaproteobacteria
Variovorax sp. 67-131 [MKWO]
86546
86630
+
Leu
CAA
[ENA]
¡û
>W1711584014
MNXY01000065
Betaproteobacteria
Comamonadaceae bacterium CG2_30_60_41 [MNXY]
3313
3397
+
Leu
CAA
[ENA]
¡û
>W1711708444
MSTP01000011
Betaproteobacteria
Achromobacter denitrificans xylosoxidans [MSTP]
105159
105075
-
Leu
CAA
[ENA]
¡û
>W1711709038
MSYM01000001
Betaproteobacteria
Rhodoferax antarcticus ANT.BR [MSYM]
21325
21409
+
Leu
CAA
[ENA]
¡û
>W1711710578
MSZO01000044
Betaproteobacteria
Alcaligenes faecalis [MSZO]
1754
1838
+
Leu
CAA
[ENA]
¡û
>W1711721709
MTJN01000002
Betaproteobacteria
Rhodoferax fermentans [MTJN]
4049930
4050014
+
Leu
CAA
[ENA]
¡û
>W1711723141
MTLH01000050
Betaproteobacteria
Achromobacter denitrificans [MTLH]
36994
36910
-
Leu
CAA
[ENA]
¡û
>W1711904614
MZNW01000026
Betaproteobacteria
Comamonas thiooxydans [MZNW]
7939
8023
+
Leu
CAA
[ENA]
¡û
>W1712110508
NJIG01000016
Betaproteobacteria
Achromobacter marplatensis [NJIG]
123450
123534
+
Leu
CAA
[ENA]
¡û
>C171008015
CP011171
Betaproteobacteria
Bordetella pertussis E150 [CP011171]
72524
72440
-
Leu
CAA
-
¡û
>C171008565
CP011183
Betaproteobacteria
Bordetella pertussis H520 [CP011183]
71475
71391
-
Leu
CAA
-
¡û
>C171011794
CP011703
Betaproteobacteria
Bordetella pertussis H779 [CP011703]
71475
71391
-
Leu
CAA
-
¡û
>C171013244
CP011732
Betaproteobacteria
Bordetella pertussis I331 [CP011732]
71475
71391
-
Leu
CAA
-
¡û
>C171013894
CP011745
Betaproteobacteria
Bordetella pertussis I762 [CP011745]
72524
72440
-
Leu
CAA
-
¡û
>C171014194
CP011751
Betaproteobacteria
Bordetella pertussis J012 [CP011751]
72524
72440
-
Leu
CAA
-
¡û
>C171014444
CP011756
Betaproteobacteria
Bordetella pertussis J027 [CP011756]
72524
72440
-
Leu
CAA
-
¡û
>C171014644
CP011760
Betaproteobacteria
Bordetella pertussis J072 [CP011760]
72524
72440
-
Leu
CAA
-
¡û
>C171015468
CP012078
Betaproteobacteria
Bordetella pertussis H681 [CP012078]
71475
71391
-
Leu
CAA
-
¡û
>C171015768
CP012084
Betaproteobacteria
Bordetella pertussis I976 [CP012084]
71475
71391
-
Leu
CAA
-
¡û
>C171020577
CP013090
Betaproteobacteria
Bordetella pertussis J191 [CP013090]
71473
71389
-
Leu
CAA
-
¡û
>C171027729
CP013870
Betaproteobacteria
Bordetella pertussis F501 [CP013870]
71475
71391
-
Leu
CAA
-
¡û
>C171028379
CP013883
Betaproteobacteria
Bordetella pertussis I093 [CP013883]
71474
71390
-
Leu
CAA
-
¡û
>C171028629
CP013888
Betaproteobacteria
Bordetella pertussis J104 [CP013888]
71475
71391
-
Leu
CAA
-
¡û
>C171028779
CP013891
Betaproteobacteria
Bordetella pertussis J121 [CP013891]
71475
71391
-
Leu
CAA
-
¡û
>C171041378
CP015769
Betaproteobacteria
Bordetella pertussis VA-145 [CP015769]
134683
134767
+
Leu
CAA
-
¡û
>C171047642
CP016341
Betaproteobacteria
Bordetella holmesii H903 [CP016341]
2959382
2959466
+
Leu
CAA
-
¡û
>C171063200
CP017476
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [CP017476]
4105189
4105273
+
Leu
CAA
-
¡û
>C171091659
CP019236
Betaproteobacteria
Rhodoferax koreense DCY-110 [CP019236]
1607051
1606967
-
Leu
CAA
-
¡û
>C171091695
CP019239
Betaproteobacteria
Rhodoferax saidenbachensis DSM 22694 [CP019239]
3149612
3149696
+
Leu
CAA
-
¡û
>C171091731
CP019240
Betaproteobacteria
Rhodoferax antarcticus DSM 24876 [CP019240]
2961183
2961267
+
Leu
CAA
-
¡û
>W131174643
ARIP01000069
Betaproteobacteria
Variovorax paradoxus 4MFCol3.1 [ARIP]
26073
25989
-
Leu
CAA
[ENA]
¡û
>W131229579
AUGX01000008
Betaproteobacteria
Ottowia thiooxydans DSM 14619 [AUGX]
350378
350294
-
Leu
CAA
[ENA]
¡û
>C003755
BX640411
Betaproteobacteria
Bordetella pertussis Tohama I [BX640411]
71475
71391
-
Leu
CAA
[Ensembl]
¡û
>WENV180033833
FTKL01438376
[FTKL] metagenome; soil
395
311
-
Leu
CAA
[ENA]
¢þ
>WENV181364599
OFOZ01000116
[OFOZ] sediment metagenome; Lake sediment
7892
7976
+
Leu
CAA
[ENA]
¢þ
>WENV181365019
OFPH01000602
[OFPH] sediment metagenome; Lake sediment
928
1012
+
Leu
CAA
[ENA]
¢þ
>WENV181365169
OFPL01000004
[OFPL] sediment metagenome; Lake sediment
17742
17826
+
Leu
CAA
[ENA]
¢þ
>W141164335
AXRW02000017
Betaproteobacteria
Bordetella pertussis STO1-CHOC-0021 [AXRW]
1072
988
-
Leu
CAA
[ENA]
¡û
>W141164938
AXSJ02000100
Betaproteobacteria
Bordetella pertussis STO1-SEAT-0004 [AXSJ]
1505
1421
-
Leu
CAA
[ENA]
¡û
>W141170128
AXXD01000003
Betaproteobacteria
Variovorax sp. JGI 0001020-D06 [AXXD]
13652
13736
+
Leu
CAA
[ENA]
¡û
>W141170159
AXXG01000044
Betaproteobacteria
Variovorax sp. JGI 0001016-M12 [AXXG]
982
1066
+
Leu
CAA
[ENA]
¡û
>WENV181732009
OGQD01007958
[OGQD] human gut metagenome; faeces
1994
1910
-
Leu
CAA
[ENA]
¢þ
>WENV181835567
OGVI01003593
[OGVI] freshwater metagenome; freshwater
306
390
+
Leu
CAA
[ENA]
¢þ
>W141199817
AYXH01000050
Betaproteobacteria
Bordetella pertussis CHLA-11 [AYXH]
44799
44715
-
Leu
CAA
[ENA]
¡û
>W141238155
BBJX01000014
Betaproteobacteria
Comamonas granuli NBRC 101663 [BBJX]
57726
57810
+
Leu
CAA
[ENA]
¡û
>W141277158
JAEJ01000028
Betaproteobacteria
Bordetella petrii J49 [JAEJ]
3622
3538
-
Leu
CAA
[ENA]
¡û
>W141319070
JBOK01000026
Betaproteobacteria
Comamonas aquatica DA1877 [JBOK]
34180
34264
+
Leu
CAA
[ENA]
¡û
>WENV183666417
ORJL010548866
[ORJL] groundwater metagenome; groundwater
1788
1704
-
Leu
CAA
[ENA]
¢þ
>WENV183725573
PJQF01001997
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
2428
2512
+
Leu
CAA
[ENA]
¢þ
>WENV183731213
PJTS01019937
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
387
303
-
Leu
CAA
[ENA]
¢þ
>WENV183732528
PJTX01001649
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
3318
3402
+
Leu
CAA
[ENA]
¢þ
>WENV183735271
PJUA01006843
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
552
636
+
Leu
CAA
[ENA]
¢þ
>WENV183735588
PJUB01000103
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
17775
17859
+
Leu
CAA
[ENA]
¢þ
>WENV183741434
PJUG01000011
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
354161
354245
+
Leu
CAA
[ENA]
¢þ
>WENV183741991
PJUH01000031
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
120402
120486
+
Leu
CAA
[ENA]
¢þ
>WENV170559285
CXWL01117730
[CXWL] groundwater metagenome; biofilm material
5886
5970
+
Leu
CAA
[ENA]
¢þ
>WENV170621592
FUWD013064552
[FUWD] metagenome; unknown
1040
956
-
Leu
CAA
[ENA]
¢þ
>WENV170629774
FUWD013280555
[FUWD] metagenome; unknown
1040
956
-
Leu
CAA
[ENA]
¢þ
>WENV170639856
JFJP01010285
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
86
2
-
Leu
CAA
[ENA]
¢þ
>WENV171003298
NNBT01003696
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
3080
3164
+
Leu
CAA
[ENA]
¢þ
>WENV171003634
NNBU01001176
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
6645
6729
+
Leu
CAA
[ENA]
¢þ
>WENV171003701
NNBV01000411
[NNBV] plant metagenome; symbiotic tissue sample KVS11
79634
79550
-
Leu
CAA
[ENA]
¢þ
>C181022671
CP016967
Betaproteobacteria
Bordetella pertussis E025 [CP016967]
71475
71391
-
Leu
CAA
-
¡û
>C181023668
CP017121
Betaproteobacteria
Bordetella pertussis J172 [CP017121]
71474
71390
-
Leu
CAA
-
¡û
>C181023768
CP017123
Betaproteobacteria
Bordetella pertussis J153 [CP017123]
71475
71391
-
Leu
CAA
-
¡û
>C181024244
CP017163
Betaproteobacteria
Bordetella pertussis J108 [CP017163]
71473
71389
-
Leu
CAA
-
¡û
>C181028784
CP017883
Betaproteobacteria
Bordetella pertussis I385 [CP017883]
71475
71391
-
Leu
CAA
-
¡û
>C181034080
CP018893
Betaproteobacteria
Bordetella holmesii [CP018893]
2964898
2964982
+
Leu
CAA
-
¡û
>C181045725
CP020649
Betaproteobacteria
Bordetella bronchiseptica E010 [CP020649]
528852
528768
-
Leu
CAA
-
¡û
>C181045912
CP020653
Betaproteobacteria
Bordetella holmesii C690 [CP020653]
2963239
2963323
+
Leu
CAA
-
¡û
>C181046968
CP020819
Betaproteobacteria
Bordetella bronchiseptica D973 [CP020819]
535462
535378
-
Leu
CAA
-
¡û
>C181078474
CP023284
Betaproteobacteria
Variovorax boronicumulans J1 [CP023284]
5723414
5723498
+
Leu
CAA
-
¡û
>C181158582
CP027669
Betaproteobacteria
Simplicispira suum SC1-8 [CP027669]
2739889
2739805
-
Leu
CAA
-
¡û
>C181159377
CP027773
Betaproteobacteria
Variovorax sp. PMC12 [CP027773, CP027774]
2605167
2605251
+
Leu
CAA
-
¡û
>C191017064
CP019931
Betaproteobacteria
Bordetella parapertussis E843 [CP019931]
529457
529373
-
Leu
CAA
-
¡û
>C191023164
CP022987
Betaproteobacteria
Pollutimonas thiosulfatoxidans YE3 [CP022987]
58158
58074
-
Leu
CAA
-
¡û
>C191029556
CP025068
Betaproteobacteria
Bordetella parapertussis B144 [CP025068]
529469
529385
-
Leu
CAA
-
¡û
>C191032826
CP025356
Betaproteobacteria
Bordetella pertussis H034 [CP025356]
71475
71391
-
Leu
CAA
-
¡û
>C191032876
CP025357
Betaproteobacteria
Bordetella pertussis F578 [CP025357]
72524
72440
-
Leu
CAA
-
¡û
>C191033776
CP025375
Betaproteobacteria
Bordetella pertussis I439 [CP025375]
71475
71391
-
Leu
CAA
-
¡û
>C191036111
CP025525
Betaproteobacteria
Bordetella pertussis I420 [CP025525]
72524
72440
-
Leu
CAA
-
¡û
>C191042453
CP026431
Betaproteobacteria
Bordetella pertussis J363 [CP026431]
72524
72440
-
Leu
CAA
-
¡û
>C191042603
CP026434
Betaproteobacteria
Bordetella pertussis J357 [CP026434]
71475
71391
-
Leu
CAA
-
¡û
>C191042903
CP026440
Betaproteobacteria
Bordetella pertussis J323 [CP026440]
71475
71391
-
Leu
CAA
-
¡û
>W141520714
JGWA01000083
Betaproteobacteria
Bordetella holmesii CDC-H719-BH [JGWA]
8986
9070
+
Leu
CAA
[ENA]
¡û
>C191044253
CP026467
Betaproteobacteria
Bordetella pertussis J401 [CP026467]
71475
71391
-
Leu
CAA
-
¡û
>C191045650
CP026624
Betaproteobacteria
Bordetella pertussis J525 [CP026624]
71474
71390
-
Leu
CAA
-
¡û
>C191045950
CP026630
Betaproteobacteria
Bordetella pertussis J378 [CP026630]
71475
71391
-
Leu
CAA
-
¡û
>W141521001
JGWG01000127
Betaproteobacteria
Bordetella bronchiseptica 00-P-2730 [JGWG]
2394
2310
-
Leu
CAA
[ENA]
¡û
>C191047225
CP026888
Betaproteobacteria
Bordetella pertussis J695 [CP026888]
71475
71391
-
Leu
CAA
-
¡û
>C191047525
CP026894
Betaproteobacteria
Bordetella pertussis J683 [CP026894]
71475
71391
-
Leu
CAA
-
¡û
>C191047825
CP026900
Betaproteobacteria
Bordetella pertussis J656 [CP026900]
71475
71391
-
Leu
CAA
-
¡û
>W141522704
JGXP01000014
Betaproteobacteria
Bordetella bronchiseptica MBORD681 [JGXP]
114833
114749
-
Leu
CAA
[ENA]
¡û
>C191099900
CP033069
Betaproteobacteria
Acidovorax sp. 1608163 [CP033069]
1495532
1495448
-
Leu
CAA
-
¡û
>C191110404
CP033730
Betaproteobacteria
Achromobacter denitrificans PheN1 [CP033730]
3149306
3149222
-
Leu
CAA
-
¡û
>C191113937
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
1478587
1478671
+
Leu
CAA
-
¡û
>C191207000
LR134329
Betaproteobacteria
Bordetella parapertussis NCTC10524 [LR134329]
1591987
1591903
-
Leu
CAA
-
¡û
>W141561773
JHYS01000010
Betaproteobacteria
Simplicispira psychrophila DSM 11588 [JHYS]
47954
48038
+
Leu
CAA
[ENA]
¡û
>W09119936
ACEE01000027
Betaproteobacteria
Variovorax paradoxus S110 [ACEE]
5895
5811
-
Leu
CAA
[ENA]
¡û
>C141002580
CP003911
Betaproteobacteria
Variovorax paradoxus B4 [CP003911, CP003912]
1489990
1489906
-
Leu
CAA
[Ensembl]
¡û
>C09111129
CP001635
Betaproteobacteria
Variovorax paradoxus [CP001635]
1411866
1411782
-
Leu
CAA
[Ensembl]
¡û
>W1910792829
MRCN01000009
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
5909
5993
+
Leu
CAA
[ENA]
¡û
>W1910803613
MTBE01000034
Betaproteobacteria
Diaphorobacter sp. LR2014-1 [MTBE]
33028
32944
-
Leu
CAA
[ENA]
¡û
>W1910889254
NESO01000001
Betaproteobacteria
Limnohabitans sp. Rim8 [NESO]
293561
293645
+
Leu
CAA
[ENA]
¡û
>W1911200385
NRER01000007
Betaproteobacteria
Bordetella bronchiseptica SH03 [NRER]
58503
58419
-
Leu
CAA
[ENA]
¡û
>W1911238569
NSCW01000203
Betaproteobacteria
Bordetella pertussis VBD1 [NSCW]
1622
1538
-
Leu
CAA
[ENA]
¡û
>W1911496700
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
5768253
5768337
+
Leu
CAA
[ENA]
¡û
>W1911647326
QAJK01000018
Betaproteobacteria
Variovorax sp. KBW07 [QAJK]
67010
67094
+
Leu
CAA
[ENA]
¡û
>W1911747012
QVTB01000001
Betaproteobacteria
Bordetella avium BA3 [QVTB]
299216
299300
+
Leu
CAA
[ENA]
¡û
>W1911775317
QXMN01000022
Betaproteobacteria
Acidovorax cavernicola 1011MAR4D40.2 [QXMN]
5998
6082
+
Leu
CAA
[ENA]
¡û
>W1810062156
PDNW01000028
Betaproteobacteria
Pollutimonas subterranea JR1/69-3-13 [PDNW]
10003
10087
+
Leu
CAA
[ENA]
¡û
>W1810072237
PEFF01000001
Betaproteobacteria
Variovorax sp. 54 [PEFF]
4642162
4642078
-
Leu
CAA
[ENA]
¡û
>W1810072640
PEFL01000001
Betaproteobacteria
Comamonas sp. 26 [PEFL]
937229
937145
-
Leu
CAA
[ENA]
¡û
>W1810192738
PKMT01000007
Betaproteobacteria
Variovorax sp. RO1 [PKMT]
98422
98338
-
Leu
CAA
[ENA]
¡û
>W1810486675
QAYA01000008
Betaproteobacteria
Variovorax sp. GV040 [QAYA]
316602
316686
+
Leu
CAA
[ENA]
¡û
>W1810570299
QEII01000236
Betaproteobacteria
Rhodoferax ferrireducens OTU1 [QEII]
238604
238520
-
Leu
CAA
[ENA]
¡û
>W1810576237
QENE01000058
Betaproteobacteria
Achromobacter xylosoxidans 5146 [QENE]
27598
27514
-
Leu
CAA
[ENA]
¡û
>W1810577508
QEOH01000002
Betaproteobacteria
Variovorax sp. GV014 [QEOH]
591058
591142
+
Leu
CAA
[ENA]
¡û
>W1810580630
QETI01000006
Betaproteobacteria
Comamonas sp. JNW [QETI]
256888
256804
-
Leu
CAA
[ENA]
¡û
>W1810609643
QGUB01000005
Betaproteobacteria
Melaminivora alkalimesophila DSM 26006 [QGUB]
89929
90013
+
Leu
CAA
[ENA]
¡û
>W1810672524
QJTM01000002
Betaproteobacteria
Variovorax sp. GV035 [QJTM]
316602
316686
+
Leu
CAA
[ENA]
¡û
>W1810676112
QKLT01000008
Betaproteobacteria
Variovorax sp. GV042 [QKLT]
316602
316686
+
Leu
CAA
[ENA]
¡û
>W1810682461
QKUE01000002
Betaproteobacteria
Variovorax sp. GV004 [QKUE]
316602
316686
+
Leu
CAA
[ENA]
¡û
>W1810759410
QPJK01000001
Betaproteobacteria
Pseudorhodoferax soli DSM 21634 [QPJK]
166431
166515
+
Leu
CAA
[ENA]
¡û
>SRA1016088
SRR023846.342990
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
39
123
+
Leu
CAA
[SRA]
>C151025427
CP007495
Betaproteobacteria
Bordetella holmesii 44057 [CP007495]
585024
585108
+
Leu
CAA
[Ensembl]
¡û
>C151105037
LN849008
Betaproteobacteria
Bordetella pertussis D420 [LN849008]
405311
405227
-
Leu
CAA
[Ensembl]
¡û
>W1510135574
CFXX01000245
Betaproteobacteria
Bordetella pertussis B159 [CFXX]
1474
1390
-
Leu
CAA
[ENA]
¡û
>W1510138276
CGAD01000293
Betaproteobacteria
Bordetella pertussis B002 [CGAD]
1501
1417
-
Leu
CAA
[ENA]
¡û
>W1510138573
CGAK01000248
Betaproteobacteria
Bordetella pertussis B091 [CGAK]
1486
1402
-
Leu
CAA
[ENA]
¡û
>W1510145638
CGFZ01000108
Betaproteobacteria
Bordetella pertussis B287 [CGFZ]
420
504
+
Leu
CAA
[ENA]
¡û
>W1510189944
CHKZ01000108
Betaproteobacteria
Bordetella pertussis B272 [CHKZ]
376
460
+
Leu
CAA
[ENA]
¡û
>W1510535586
CSLW01000259
Betaproteobacteria
Bordetella pertussis B124 [CSLW]
3673
3757
+
Leu
CAA
[ENA]
¡û
>W1510535906
CSMD01000265
Betaproteobacteria
Bordetella pertussis B286 [CSMD]
1502
1418
-
Leu
CAA
[ENA]
¡û
>W1510536199
CSMJ01000181
Betaproteobacteria
Bordetella pertussis B072 [CSMJ]
1485
1401
-
Leu
CAA
[ENA]
¡û
>W1510538011
CSNU01000253
Betaproteobacteria
Bordetella pertussis B132 [CSNU]
3707
3791
+
Leu
CAA
[ENA]
¡û
>W1510539900
CSPI01000247
Betaproteobacteria
Bordetella pertussis B170 [CSPI]
1481
1397
-
Leu
CAA
[ENA]
¡û
>W1510540941
CSQD01000267
Betaproteobacteria
Bordetella pertussis B004 [CSQD]
1493
1409
-
Leu
CAA
[ENA]
¡û
>W1510542895
CSRS01000239
Betaproteobacteria
Bordetella pertussis B283 [CSRS]
1524
1440
-
Leu
CAA
[ENA]
¡û
>W1510543351
CSSC01000249
Betaproteobacteria
Bordetella pertussis B066 [CSSC]
3678
3762
+
Leu
CAA
[ENA]
¡û
>W1510543654
CSSI01000155
Betaproteobacteria
Bordetella pertussis B071 [CSSI]
1479
1395
-
Leu
CAA
[ENA]
¡û
>W1510639329
CVJF01000244
Betaproteobacteria
Bordetella pertussis B303 [CVJF]
3670
3754
+
Leu
CAA
[ENA]
¡û
>W1511310860
JPQP01000023
Betaproteobacteria
Bordetella trematum HR18 [JPQP]
517048
517132
+
Leu
CAA
[ENA]
¡û
>C11118200
CP002663
Betaproteobacteria
Pusillimonas sp. T7-7 [CP002663]
2340762
2340846
+
Leu
CAA
[Ensembl]
¡û
>W1511393754
JTAT01000001
Betaproteobacteria
Achromobacter xylosoxidans FDAARGOS_88 [JTAT]
4369619
4369703
+
Leu
CAA
[ENA]
¡û
>C11123618
CP002417
Betaproteobacteria
Variovorax paradoxus EPS [CP002417]
1555113
1555029
-
Leu
CAA
[Ensembl]
¡û
>W1511508921
JXQQ01000018
Betaproteobacteria
Variovorax paradoxus MEDvA23 [JXQQ]
8949
8865
-
Leu
CAA
[ENA]
¡û
>W1511554991
JZWI01000009
Betaproteobacteria
Variovorax paradoxus TBEA6 [JZWI]
117501
117417
-
Leu
CAA
[ENA]
¡û
>C161002841
CP016603
Betaproteobacteria
Comamonas aquatica CJG [CP016603]
2991373
2991457
+
Leu
CAA
-
¡û
>C161024261
CP010263
Betaproteobacteria
Bordetella pertussis I646 [CP010263]
71475
71391
-
Leu
CAA
-
¡û
>C161024361
CP010265
Betaproteobacteria
Bordetella pertussis I669 [CP010265]
71475
71391
-
Leu
CAA
-
¡û
>C161028956
CP010840
Betaproteobacteria
Bordetella pertussis H379 [CP010840]
72524
72440
-
Leu
CAA
-
¡û
>C161035819
CP011447
Betaproteobacteria
Bordetella pertussis B3913 [CP011447]
71475
71391
-
Leu
CAA
-
¡û
>C161073183
CP014517
Betaproteobacteria
Variovorax sp. PAMC 28711 [CP014517]
3022464
3022380
-
Leu
CAA
[Ensembl]
¡û
>C161096242
CP016338
Betaproteobacteria
Bordetella pertussis B202 [CP016338]
73573
73489
-
Leu
CAA
-
¡û
>W121084953
AKIW01000020
Betaproteobacteria
Variovorax sp. CF313 [AKIW]
38872
38788
-
Leu
CAA
[ENA]
¡û
>W1610002273
AEJF01000180
Betaproteobacteria
Caballeronia mineralivorans PML1(12) [AEJF]
81832
81748
-
Leu
CAA
[ENA]
¡û
>W1610028788
AWTM01000013
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTM]
125245
125329
+
Leu
CAA
[ENA]
¡û
>W1610072172
BCUS01000094
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
23314
23398
+
Leu
CAA
[ENA]
¡û
>W1610072185
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
1343035
1343119
+
Leu
CAA
[ENA]
¡û
>W1610077161
BCZH01000263
Betaproteobacteria
Bordetella pertussis NBRC 107857 [BCZH]
2881
2965
+
Leu
CAA
[ENA]
¡û
>W1610722491
LMCQ01000020
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
190839
190755
-
Leu
CAA
[ENA]
¡û
>W1610724809
LMEK01000001
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
234017
233933
-
Leu
CAA
[ENA]
¡û
>W1610735750
LMMT01000009
Betaproteobacteria
Pseudorhodoferax sp. Leaf265 [LMMT]
140653
140737
+
Leu
CAA
[ENA]
¡û
>W1610735855
LMMV01000012
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
44800
44716
-
Leu
CAA
[ENA]
¡û
>W1610736107
LMNA01000029
Betaproteobacteria
Pseudorhodoferax sp. Leaf274 [LMNA]
41690
41606
-
Leu
CAA
[ENA]
¡û
>W1610765987
LNOL01000006
Betaproteobacteria
Alcaligenes faecalis [LNOL]
94929
95013
+
Leu
CAA
[ENA]
¡û
>W1610954348
LVHG01000002
Betaproteobacteria
Variovorax paradoxus [LVHG]
77987
77903
-
Leu
CAA
[ENA]
¡û
>W1610977549
LVWD01000004
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
217285
217201
-
Leu
CAA
[ENA]
¡û
>W1710003712
AEJF01000180
Betaproteobacteria
Caballeronia mineralivorans PML1(12) [AEJF]
81832
81748
-
Leu
CAA
[ENA]
¡û
>W1710026158
AWTM01000013
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTM]
125245
125329
+
Leu
CAA
[ENA]
¡û
>W1710069374
BCUS01000094
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
23314
23398
+
Leu
CAA
[ENA]
¡û
>W1710069387
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
1343035
1343119
+
Leu
CAA
[ENA]
¡û
>W1710074799
BCZH01000263
Betaproteobacteria
Bordetella pertussis NBRC 107857 [BCZH]
2881
2965
+
Leu
CAA
[ENA]
¡û
>W1710506209
FMUJ01000006
Betaproteobacteria
Variovorax sp. EL159 [FMUJ]
145874
145958
+
Leu
CAA
[ENA]
¡û
>W1710512950
FMZU01000015
Betaproteobacteria
Variovorax sp. CF079 [FMZU]
11442
11526
+
Leu
CAA
[ENA]
¡û
>W1710517955
FNDR01000006
Betaproteobacteria
Variovorax sp. OV700 [FNDR]
399439
399523
+
Leu
CAA
[ENA]
¡û
>W1710530013
FNOL01000001
Betaproteobacteria
Variovorax sp. YR634 [FNOL]
412534
412450
-
Leu
CAA
[ENA]
¡û
>W1710531347
FNPM01000001
Betaproteobacteria
Variovorax sp. YR266 [FNPM]
422582
422666
+
Leu
CAA
[ENA]
¡û
>W1710542694
FNZJ01000001
Betaproteobacteria
Variovorax sp. OK202 [FNZJ]
806783
806699
-
Leu
CAA
[ENA]
¡û
>W1710554292
FOII01000002
Betaproteobacteria
Variovorax sp. OV084 [FOII]
433395
433479
+
Leu
CAA
[ENA]
¡û
>W1710556871
FOKN01000007
Betaproteobacteria
Delftia tsuruhatensis [FOKN]
181583
181499
-
Leu
CAA
[ENA]
¡û
>W1710557390
FOKZ01000003
Betaproteobacteria
Polaromonas sp. OV174 [FOKZ]
193948
194032
+
Leu
CAA
[ENA]
¡û
>W1710558133
FOLP01000001
Betaproteobacteria
Variovorax sp. OK212 [FOLP]
806783
806699
-
Leu
CAA
[ENA]
¡û
>W1710561133
FONX01000007
Betaproteobacteria
Paracidovorax wautersii [FONX]
144738
144654
-
Leu
CAA
[ENA]
¡û
>W1710572118
FOWL01000002
Betaproteobacteria
Variovorax sp. OK605 [FOWL]
176916
176832
-
Leu
CAA
[ENA]
¡û
>W1710573304
FOXJ01000005
Betaproteobacteria
Variovorax sp. 770b2 [FOXJ]
364485
364401
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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