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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95953 (94 seq.)
>W1710869880
LMKB01000005
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
1002551
1002469
-
Tyr
GTA
[ENA]
¡û
>W1710871340
LMLG01000001
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
328240
328322
+
Tyr
GTA
[ENA]
¡û
>W1710872718
LMMF01000001
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
331782
331864
+
Tyr
GTA
[ENA]
¡û
>W1710872934
LMMJ01000009
Actinomycetota
Curtobacterium sp. Leaf261 [LMMJ]
358903
358819
-
Tyr
GTA
[ENA]
¡û
>W1710873136
LMMO01000003
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
67637
67719
+
Tyr
GTA
[ENA]
¡û
>W1710874694
LMNV01000002
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
1274291
1274207
-
Tyr
GTA
[ENA]
¡û
>W1710875839
LMOS01000004
Actinomycetota
Curtobacterium sp. Leaf154 [LMOS]
529001
529085
+
Tyr
GTA
[ENA]
¡û
>W1710876046
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
566852
566937
+
Tyr
GTA
[ENA]
¡û
>W1710876247
LMPB01000002
Actinomycetota
Frigoribacterium sp. Leaf172 [LMPB]
1077296
1077214
-
Tyr
GTA
[ENA]
¡û
>W1710876884
LMPQ01000001
Actinomycetota
Frigoribacterium sp. Leaf186 [LMPQ]
1040887
1040805
-
Tyr
GTA
[ENA]
¡û
>W1710878099
LMQR01000001
Actinomycetota
Frigoribacterium sp. Leaf415 [LMQR]
331650
331732
+
Tyr
GTA
[ENA]
¡û
>W131110274
APJN01000038
Actinomycetota
Curtobacterium flaccumfaciens UCD-AKU [APJN]
39852
39936
+
Tyr
GTA
[ENA]
¡û
>W1711455997
MJAK01000004
Actinomycetota
Curtobacterium sp. ER1/6 [MJAK]
78337
78419
+
Tyr
GTA
[ENA]
¡û
>W1711460905
MJGI01000023
Actinomycetota
Curtobacterium sp. MCBA15_001 [MJGI]
454881
454963
+
Tyr
GTA
[ENA]
¡û
>W1711460959
MJGJ01000038
Actinomycetota
Curtobacterium sp. MCBA15_003 [MJGJ]
360905
360989
+
Tyr
GTA
[ENA]
¡û
>W1711461046
MJGL01000056
Actinomycetota
Curtobacterium sp. MCBA15_005 [MJGL]
98407
98323
-
Tyr
GTA
[ENA]
¡û
>W1711461088
MJGM01000034
Actinomycetota
Curtobacterium sp. MCBA15_007 [MJGM]
119558
119474
-
Tyr
GTA
[ENA]
¡û
>W1711461104
MJGN01000001
Actinomycetota
Curtobacterium sp. MCBA15_008 [MJGN]
193874
193792
-
Tyr
GTA
[ENA]
¡û
>W1711461175
MJGO01000039
Actinomycetota
Curtobacterium sp. MCBA15_009 [MJGO]
302696
302612
-
Tyr
GTA
[ENA]
¡û
>W1711461260
MJGQ01000013
Actinomycetota
Curtobacterium sp. MCBA15_013 [MJGQ]
43335
43419
+
Tyr
GTA
[ENA]
¡û
>W1711461320
MJGR01000076
Actinomycetota
Curtobacterium sp. MCBA15_016 [MJGR]
40794
40878
+
Tyr
GTA
[ENA]
¡û
>W1711461343
MJGS01000002
Actinomycetota
Frigoribacterium sp. MCBA15_019 [MJGS]
279883
279965
+
Tyr
GTA
[ENA]
¡û
>W1711461412
MJGT01000105
Actinomycetota
Curtobacterium sp. MMLR14_002 [MJGT]
50236
50320
+
Tyr
GTA
[ENA]
¡û
>W1711461450
MJGU01000023
Actinomycetota
Curtobacterium sp. MMLR14_006 [MJGU]
357705
357789
+
Tyr
GTA
[ENA]
¡û
>W1711461579
MJGX01000069
Actinomycetota
Curtobacterium sp. MMLR14_014 [MJGX]
32634
32718
+
Tyr
GTA
[ENA]
¡û
>C171063805
CP017580
Actinomycetota
Curtobacterium sp. BH-2-1-1 [CP017580]
2873481
2873565
+
Tyr
GTA
-
¡û
>C171083625
CP018783
Actinomycetota
Curtobacterium pusillum AA3 [CP018783]
1182305
1182221
-
Tyr
GTA
-
¡û
>WENV180025964
FTIR01000989
[FTIR] metagenome; soil
4704
4787
+
Tyr
GTA
[ENA]
¢þ
>WENV180209849
OBAL01029366
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
521
439
-
Tyr
GTA
[ENA]
¢þ
>WENV180210130
OBAL01117194
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
344
427
+
Tyr
GTA
[ENA]
¢þ
>WENV180362274
OBNW01095041
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
309
227
-
Tyr
GTA
[ENA]
¢þ
>W141223013
BACW01000531
Actinomycetota
Curtobacterium sp. B8 [BACW]
20551
20633
+
Tyr
GTA
[ENA]
¡û
>W141223134
BACZ01000287
Actinomycetota
Curtobacterium sp. B18 [BACZ]
9999
10083
+
Tyr
GTA
[ENA]
¡û
>WENV019302
AACY020529808
Marine microbial communities from Global Ocean Sampling (GOS)
2202
2116
-
Tyr
GTA
[ENA]
>WENV019822
AACY020540009
Marine microbial communities from Global Ocean Sampling (GOS)
2621
2535
-
Tyr
GTA
[ENA]
>ENV08001699
ABNY01027832
saltern metagenome; microbial fraction from plasmids from marine microbial community in low salinity saltern in San Diego, CA
101
17
-
Tyr
GTA
[ENA]
¡û
>WENV170820722
MDSY01009359
[MDSY] marine metagenome; seawater
5854
5938
+
Tyr
GTA
[ENA]
¢þ
>C191011718
CP014619
Actinomycetota
Frondihabitans sp. 762G35 [CP014619]
2279722
2279640
-
Tyr
GTA
-
¡û
>C191055994
CP027869
Actinomycetota
Curtobacterium sp. SGAir0471 [CP027869]
2440040
2439958
-
Tyr
GTA
-
¡û
>W141702208
JMLI01000014
Actinomycetota
Curtobacterium sp. UNCCL17 [JMLI]
367101
367185
+
Tyr
GTA
[ENA]
¡û
>W1911496203
OCMI01000002
Actinomycetota
Curtobacterium sp. 314Chir4.1 [OCMI]
274086
274002
-
Tyr
GTA
[ENA]
¡û
>W1911631229
PUEZ01000003
Actinomycetota
Curtobacterium flaccumfaciens pv. flaccumfaciens CFBP3418 [PUEZ]
642575
642659
+
Tyr
GTA
[ENA]
¡û
>W1911681995
QKLC01000010
Actinomycetota
Curtobacterium sp. MCPF17_003 [QKLC]
95644
95560
-
Tyr
GTA
[ENA]
¡û
>W1911685078
QKSE01000012
Actinomycetota
Curtobacterium sp. MCPF17_051 [QKSE]
50798
50882
+
Tyr
GTA
[ENA]
¡û
>W1911685210
QKSH01000013
Actinomycetota
Curtobacterium sp. MCPF17_021 [QKSH]
96964
96880
-
Tyr
GTA
[ENA]
¡û
>W1911685262
QKSI01000013
Actinomycetota
Curtobacterium sp. MCPF17_002 [QKSI]
49289
49371
+
Tyr
GTA
[ENA]
¡û
>W1911685285
QKSJ01000002
Actinomycetota
Curtobacterium sp. MCPF17_018 [QKSJ]
131412
131496
+
Tyr
GTA
[ENA]
¡û
>W1911685777
QKTR01000005
Actinomycetota
Curtobacterium sp. MCBD17_026 [QKTR]
50889
50973
+
Tyr
GTA
[ENA]
¡û
>W1810675471
QKLE01000009
Actinomycetota
Curtobacterium sp. MCSS17_011 [QKLE]
96972
96890
-
Tyr
GTA
[ENA]
¡û
>W1810675595
QKLH01000002
Actinomycetota
Curtobacterium sp. MCLR17_043 [QKLH]
181626
181542
-
Tyr
GTA
[ENA]
¡û
>W1810681042
QKSO01000007
Actinomycetota
Curtobacterium sp. MCSS17_006 [QKSO]
111068
111152
+
Tyr
GTA
[ENA]
¡û
>W1810681085
QKSP01000006
Actinomycetota
Curtobacterium sp. MCSS17_005 [QKSP]
178202
178118
-
Tyr
GTA
[ENA]
¡û
>W1810681155
QKSQ01000009
Actinomycetota
Curtobacterium sp. MCSS17_016 [QKSQ]
121902
121986
+
Tyr
GTA
[ENA]
¡û
>W1810681247
QKSS01000003
Actinomycetota
Curtobacterium sp. MCJR17_020 [QKSS]
97823
97739
-
Tyr
GTA
[ENA]
¡û
>W1810681339
QKSU01000003
Actinomycetota
Curtobacterium sp. MCLR17_059 [QKSU]
124749
124833
+
Tyr
GTA
[ENA]
¡û
>W1810681386
QKSV01000006
Actinomycetota
Curtobacterium sp. MCLR17_058 [QKSV]
3430
3514
+
Tyr
GTA
[ENA]
¡û
>W1810681457
QKSW01000029
Actinomycetota
Curtobacterium sp. MCLR17_057 [QKSW]
31380
31296
-
Tyr
GTA
[ENA]
¡û
>W1810681481
QKSX01000007
Actinomycetota
Curtobacterium sp. MCLR17_055 [QKSX]
3270
3354
+
Tyr
GTA
[ENA]
¡û
>W1810681526
QKSY01000007
Actinomycetota
Curtobacterium sp. MCLR17_054 [QKSY]
36687
36603
-
Tyr
GTA
[ENA]
¡û
>W1810681569
QKSZ01000004
Actinomycetota
Curtobacterium sp. MCLR17_053 [QKSZ]
51316
51400
+
Tyr
GTA
[ENA]
¡û
>W1810681612
QKTA01000001
Actinomycetota
Curtobacterium sp. MCLR17_051 [QKTA]
187148
187064
-
Tyr
GTA
[ENA]
¡û
>W1810681675
QKTB01000010
Actinomycetota
Curtobacterium sp. MCLR17_045 [QKTB]
91300
91216
-
Tyr
GTA
[ENA]
¡û
>W1810681716
QKTC01000009
Actinomycetota
Curtobacterium sp. MCLR17_044 [QKTC]
122496
122580
+
Tyr
GTA
[ENA]
¡û
>W1810681754
QKTD01000002
Actinomycetota
Curtobacterium sp. MCLR17_042 [QKTD]
253317
253233
-
Tyr
GTA
[ENA]
¡û
>W1810681810
QKTE01000007
Actinomycetota
Curtobacterium sp. MCLR17_040 [QKTE]
121978
122062
+
Tyr
GTA
[ENA]
¡û
>W1810681839
QKTF01000001
Actinomycetota
Curtobacterium sp. MCLR17_039 [QKTF]
275061
274977
-
Tyr
GTA
[ENA]
¡û
>W1810681891
QKTG01000009
Actinomycetota
Curtobacterium sp. MCLR17_036 [QKTG]
44101
44017
-
Tyr
GTA
[ENA]
¡û
>W1810681937
QKTH01000003
Actinomycetota
Curtobacterium sp. MCLR17_034 [QKTH]
180400
180316
-
Tyr
GTA
[ENA]
¡û
>W1810682023
QKTJ01000001
Actinomycetota
Curtobacterium sp. MCLR17_031 [QKTJ]
252522
252606
+
Tyr
GTA
[ENA]
¡û
>W1511509130
JXQU01000024
Actinomycetota
Curtobacterium flaccumfaciens MEB126 [JXQU]
941
857
-
Tyr
GTA
[ENA]
¡û
>W1511509362
JXQZ01000002
Actinomycetota
Frigoribacterium sp. MEB024 [JXQZ]
62373
62291
-
Tyr
GTA
[ENA]
¡û
>C161021922
CP009755
Actinomycetota
Curtobacterium sp. MR_MD2014 [CP009755]
2407074
2406992
-
Tyr
GTA
[Ensembl]
¡û
>C161073135
CP014513
Actinomycetota
Frondihabitans sp. PAMC 28766 [CP014513]
4009939
4009855
-
Tyr
GTA
[Ensembl]
¡û
>WENV070521
AACY023812150
Marine microbial communities from Global Ocean Sampling (GOS)
1145
1231
+
Tyr
GTA
[ENA]
>WENV070595
AACY023815576
Marine microbial communities from Global Ocean Sampling (GOS)
490
576
+
Tyr
GTA
[ENA]
>W1610590012
LDRB01000137
Actinomycetota
Curtobacterium oceanosedimentum [LDRB]
1222
1140
-
Tyr
GTA
[ENA]
¡û
>W1610590027
LDRC01000015
Actinomycetota
Curtobacterium oceanosedimentum [LDRC]
7119
7037
-
Tyr
GTA
[ENA]
¡û
>W1610620616
LHOZ01000070
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
47154
47236
+
Tyr
GTA
[ENA]
¡û
>W1610732226
LMKB01000005
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
1002551
1002469
-
Tyr
GTA
[ENA]
¡û
>W1610733686
LMLG01000001
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
328240
328322
+
Tyr
GTA
[ENA]
¡û
>W1610735064
LMMF01000001
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
331782
331864
+
Tyr
GTA
[ENA]
¡û
>W1610735280
LMMJ01000009
Actinomycetota
Curtobacterium sp. Leaf261 [LMMJ]
358903
358819
-
Tyr
GTA
[ENA]
¡û
>W1610735482
LMMO01000003
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
67637
67719
+
Tyr
GTA
[ENA]
¡û
>W1610737040
LMNV01000002
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
1274291
1274207
-
Tyr
GTA
[ENA]
¡û
>W1610738185
LMOS01000004
Actinomycetota
Curtobacterium sp. Leaf154 [LMOS]
529001
529085
+
Tyr
GTA
[ENA]
¡û
>W1610738392
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
566852
566937
+
Tyr
GTA
[ENA]
¡û
>W1610738593
LMPB01000002
Actinomycetota
Frigoribacterium sp. Leaf172 [LMPB]
1077296
1077214
-
Tyr
GTA
[ENA]
¡û
>W1610739230
LMPQ01000001
Actinomycetota
Frigoribacterium sp. Leaf186 [LMPQ]
1040887
1040805
-
Tyr
GTA
[ENA]
¡û
>W1610740445
LMQR01000001
Actinomycetota
Frigoribacterium sp. Leaf415 [LMQR]
331650
331732
+
Tyr
GTA
[ENA]
¡û
>W1710526364
FNKG01000002
Actinomycetota
Curtobacterium sp. UNCCL20 [FNKG]
548456
548538
+
Tyr
GTA
[ENA]
¡û
>W1710561410
FOOD01000003
Actinomycetota
Curtobacterium sp. YR515 [FOOD]
434188
434272
+
Tyr
GTA
[ENA]
¡û
>W1710709292
LDRB01000137
Actinomycetota
Curtobacterium oceanosedimentum [LDRB]
1222
1140
-
Tyr
GTA
[ENA]
¡û
>W1710709307
LDRC01000015
Actinomycetota
Curtobacterium oceanosedimentum [LDRC]
7119
7037
-
Tyr
GTA
[ENA]
¡û
>W1710748310
LHOZ01000070
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
47154
47236
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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