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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96678 (23 seq.)
>W1710856792
LLZQ01000002
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
183394
183479
+
Tyr
GTA
[ENA]
¡û
>W1711072330
LSHM01000035
Alphaproteobacteria
Blastomonas sp. CCH9-A1 [LSHM]
122108
122193
+
Tyr
GTA
[ENA]
¡û
>W1711072541
LSHR01000057
Alphaproteobacteria
Blastomonas sp. CCH3-E3 [LSHR]
76275
76360
+
Tyr
GTA
[ENA]
¡û
>W1711072649
LSHU01000024
Alphaproteobacteria
Blastomonas sp. CCH7-E1 [LSHU]
122103
122188
+
Tyr
GTA
[ENA]
¡û
>W1711072870
LSHZ01000098
Alphaproteobacteria
Blastomonas sp. CCH4-D12 [LSHZ]
20373
20288
-
Tyr
GTA
[ENA]
¡û
>W1711074159
LSJG01000185
Alphaproteobacteria
Porphyrobacter sp. CCH7-A1 [LSJG]
45418
45503
+
Tyr
GTA
[ENA]
¡û
>W131222138
AUBA01000011
Alphaproteobacteria
Novosphingobium acidiphilum DSM 19966 [AUBA]
61909
61824
-
Tyr
GTA
[ENA]
¡û
>W1711793274
MWLM01000056
Alphaproteobacteria
Novosphingobium sp. B 225 [MWLM]
64356
64271
-
Tyr
GTA
[ENA]
¡û
>WENV180030210
FTJL01353661
[FTJL] metagenome; soil
6
91
+
Tyr
GTA
[ENA]
¡û
>WENV183729525
PJTQ01059779
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
106
191
+
Tyr
GTA
[ENA]
¡û
>WENV183740884
PJUF01015499
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
67
152
+
Tyr
GTA
[ENA]
¡û
>W2010523107
JAANOZ010000002
Alphaproteobacteria
Altererythrobacter sp. YJ20 [JAANOZ]
222096
222011
-
Tyr
GTA
[ENA]
¡û
>W2011461047
RPFZ01000001
Alphaproteobacteria
Erythrobacter sp. HN-E23 [RPFZ]
2678018
2678103
+
Tyr
GTA
[ENA]
¡û
>W2011652679
SNZX01000002
Alphaproteobacteria
Novosphingobium sp. GV013 [SNZX]
243963
243878
-
Tyr
GTA
[ENA]
¡û
>W2011653284
SOAI01000002
Alphaproteobacteria
Novosphingobium sp. GV002 [SOAI]
243963
243878
-
Tyr
GTA
[ENA]
¡û
>W2012439107
WTYM01000028
Alphaproteobacteria
Altererythrobacter salegens MCCC 1K01500 [WTYM]
12557
12642
+
Tyr
GTA
[ENA]
¡û
>W2110093365
CAJCHR010000002
Actinomycetota
Actinobacteria bacterium 21-64-8 [CAJCHR]
8551
8636
+
Tyr
GTA
[ENA]
¡û
>W2110635396
JAHOOZ010000001
Alphaproteobacteria
Novosphingobium sp. G106 [JAHOOZ]
1721796
1721711
-
Tyr
GTA
[ENA]
¡û
>W2110710063
JAIZDA010000072
Alphaproteobacteria
Novosphingobium sp. FKTRR1 [JAIZDA]
3168
3083
-
Tyr
GTA
[ENA]
¡û
>C211376187
CP080327
Alphaproteobacteria
Aquisediminimonas profunda DS48-3 [CP080327]
309059
309144
+
Tyr
GTA
-
¡û
>C231620058
CP119316
Alphaproteobacteria
Sphingomonadaceae bacterium [CP119316]
24061
24146
+
Tyr
GTA
-
¡û
>W1610719173
LLZQ01000002
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
183394
183479
+
Tyr
GTA
[ENA]
¡û
>W1611004983
LXQM01000021
Alphaproteobacteria
Croceibacterium salegens XY-R17 [LXQM]
11071
10986
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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