This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96897 (26 seq.)
>W131166806
ARCT01000001
Alphaproteobacteria
Methylocystis rosea SV97 [ARCT]
1865734
1865818
+
Leu
TAG
[ENA]
¡û
>C018842
CP000463
Alphaproteobacteria
Rhodopseudomonas palustris [CP000463]
2771100
2771184
+
Leu
TAG
[Ensembl]
¡û
>WENV180248808
OBEQ010142956
[OBEQ] groundwater metagenome; groundwater
31
115
+
Leu
TAG
[ENA]
¢þ
>W08008830
ABLP01000001
Alphaproteobacteria
Methylocella silvestris BL2 [ABLP]
106541
106460
-
Leu
TAG
[ENA]
¡û
>W141188908
AYNA01000090
Alphaproteobacteria
Methylocystis sp. SB2 [AYNA]
50881
50797
-
Leu
TAG
[ENA]
¡û
>WENV183660759
ORJL010050639
[ORJL] groundwater metagenome; groundwater
9806
9890
+
Leu
TAG
[ENA]
¢þ
>WENV183694442
ORMF012234043
[ORMF] groundwater metagenome; groundwater
413
497
+
Leu
TAG
[ENA]
¢þ
>WENV170011848
APMI01096608
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
126
210
+
Leu
TAG
[ENA]
¢þ
>C191005694
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
2518190
2518106
-
Leu
TAG
-
¡û
>C191028890
CP024846
Alphaproteobacteria
Beijerinckiaceae bacterium MG08 [CP024846]
603250
603166
-
Leu
TAG
-
¡û
>C191118882
CP034086
Alphaproteobacteria
Methylocystis rosea GW6 [CP034086]
822234
822318
+
Leu
TAG
-
¡û
>W09103885
AALA01000018
Alphaproteobacteria
Rhodopseudomonas palustris BisA53 [AALA]
95233
95317
+
Leu
TAG
[ENA]
¡û
>W141817285
JQKO01000009
Alphaproteobacteria
Methylocapsa aurea [JQKO]
181813
181729
-
Leu
TAG
[ENA]
¡û
>C09107900
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
3206550
3206634
+
Leu
TAG
[Ensembl]
¡û
>W1911747223
QWDD01000001
Alphaproteobacteria
Methylocystis hirsuta CSC1 [QWDD]
1481557
1481641
+
Leu
TAG
[ENA]
¡û
>W1810068788
PDZR01000007
Alphaproteobacteria
Methylocella silvestris TVC [PDZR]
128865
128949
+
Leu
TAG
[ENA]
¡û
>W1810397184
PYDU01000003
Alphaproteobacteria
Methylocystis sp. MitZ-2018 [PYDU]
55306
55222
-
Leu
TAG
[ENA]
¡û
>W1810700567
QMDI01000002
Alphaproteobacteria
Elioraea thermophila YIM 72297 [QMDI]
206056
205972
-
Leu
TAG
[ENA]
¡û
>ENV09001102
ABSQ01032488
Freshwater sediment metagenome lwMethenol_C1
145
61
-
Leu
TAG
[ENA]
¡û
>W11150254
AEVM01000026
Alphaproteobacteria
Methylocystis sp. ATCC 49242 [AEVM]
14920
14836
-
Leu
TAG
[ENA]
¡û
>W1511705981
LGTB01000004
Alphaproteobacteria
Bradyrhizobium viridifuturi SEMIA 690 [LGTB]
8981
9065
+
Leu
TAG
[ENA]
¡û
>C161001678
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
153953
153869
-
Leu
TAG
[Ensembl]
¡û
>C161048004
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
1140607
1140691
+
Leu
TAG
-
¡û
>C161108071
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
540580
540664
+
Leu
TAG
[Ensembl]
¡û
>W121067971
AJTV01000005
Alphaproteobacteria
Methylocystis parvus OBBP [AJTV]
44609
44693
+
Leu
TAG
[ENA]
¡û
>C131019923
HE956757
Alphaproteobacteria
Methylocystis sp. SC2 [HE956757]
3299007
3299091
+
Leu
TAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK