This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.97113 (85 seq.)
>W1710926752
LOEL01000013
Bacteroidota
Porphyromonas gingivalis [LOEL]
23499
23585
+
Leu
TAG
[ENA]
¡û
>W131111451
APMB01000228
Bacteroidota
Porphyromonas gingivalis JCVI SC001 [APMB]
4151
4069
-
Leu
TAG
[ENA]
¡û
>W131175816
ARJN01000066
Bacteroidota
Porphyromonas gulae DSM 15663 [ARJN]
42847
42765
-
Leu
TAG
[ENA]
¡û
>W1712084874
NHRU01000006
Bacteroidota
Porphyromonas gingivalis [NHRU]
20954
21036
+
Leu
TAG
[ENA]
¡û
>C016359
AE015924
Bacteroidota
Porphyromonas gingivalis W83 [AE015924]
1028024
1028108
+
Leu
TAG
[Ensembl]
¡û
>WENV180003985
FLRQ01000796
[FLRQ] metagenome; saliva
1101
1187
+
Leu
TAG
[ENA]
¢þ
>WENV180006903
FLRZ01018475
[FLRZ] metagenome; saliva
36
122
+
Leu
TAG
[ENA]
¢þ
>WENV180007647
FLSA01149809
[FLSA] metagenome; saliva
104
22
-
Leu
TAG
[ENA]
¢þ
>WENV180731473
ODGW01000879
[ODGW] human metagenome; G_DNA_Supragingival plaque
4354
4440
+
Leu
TAG
[ENA]
¢þ
>W141074458
ASYL01000140
Bacteroidota
Porphyromonas gingivalis SJD2 [ASYL]
4208
4122
-
Leu
TAG
[ENA]
¡û
>W141145627
AWUU01000042
Bacteroidota
Porphyromonas gingivalis F0568 [AWUU]
23135
23217
+
Leu
TAG
[ENA]
¡û
>W141145667
AWUV01000056
Bacteroidota
Porphyromonas gingivalis F0569 [AWUV]
86956
87038
+
Leu
TAG
[ENA]
¡û
>W141145699
AWUW01000010
Bacteroidota
Porphyromonas gingivalis F0570 [AWUW]
2041
2123
+
Leu
TAG
[ENA]
¡û
>W141145937
AWVC01000003
Bacteroidota
Porphyromonas gingivalis F0185 [AWVC]
25727
25809
+
Leu
TAG
[ENA]
¡û
>W141145982
AWVD01000057
Bacteroidota
Porphyromonas gingivalis F0566 [AWVD]
4041
3959
-
Leu
TAG
[ENA]
¡û
>W141146057
AWVE01000138
Bacteroidota
Porphyromonas gingivalis W4087 [AWVE]
4340
4426
+
Leu
TAG
[ENA]
¡û
>WENV182005505
OHBE01006243
[OHBE] human gut metagenome; faeces
4129
4047
-
Leu
TAG
[ENA]
¢þ
>C08007306
AP009380
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [AP009380]
1093833
1093747
-
Leu
TAG
[Ensembl]
¡û
>WENV183507899
OMGZ01000133
[OMGZ] human oral metagenome; human oral
705
787
+
Leu
TAG
[ENA]
¢þ
>C181102108
CP024591
Bacteroidota
Porphyromonas gingivalis KCOM 2802 [CP024591]
326676
326590
-
Leu
TAG
-
¡û
>C181102123
CP024592
Bacteroidota
Porphyromonas gingivalis KCOM 2803 [CP024592]
1140542
1140624
+
Leu
TAG
-
¡û
>C181102208
CP024593
Bacteroidota
Porphyromonas gingivalis KCOM 2804 [CP024593]
41003
40917
-
Leu
TAG
-
¡û
>C181102241
CP024594
Bacteroidota
Porphyromonas gingivalis KCOM 2805 [CP024594]
1441098
1441012
-
Leu
TAG
-
¡û
>C181102268
CP024595
Bacteroidota
Porphyromonas gingivalis KCOM 3001 [CP024595]
970820
970902
+
Leu
TAG
-
¡û
>C181102330
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
2209717
2209631
-
Leu
TAG
-
¡û
>C181102367
CP024597
Bacteroidota
Porphyromonas gingivalis KCOM 2796 [CP024597]
1797432
1797514
+
Leu
TAG
-
¡û
>C181102452
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
127134
127048
-
Leu
TAG
-
¡û
>C181102489
CP024599
Bacteroidota
Porphyromonas gingivalis KCOM 2800 [CP024599]
2145399
2145317
-
Leu
TAG
-
¡û
>C181102537
CP024600
Bacteroidota
Porphyromonas gingivalis KCOM 2801 [CP024600]
1822259
1822173
-
Leu
TAG
-
¡û
>C181102598
CP024601
Bacteroidota
Porphyromonas gingivalis KCOM 2799 [CP024601]
388018
387932
-
Leu
TAG
-
¡û
>C181123610
CP025930
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [CP025930]
1094888
1094802
-
Leu
TAG
-
¡û
>C181123661
CP025931
Bacteroidota
Porphyromonas gingivalis TDC 60 [CP025931]
1230895
1230809
-
Leu
TAG
-
¡û
>C181123709
CP025932
Bacteroidota
Porphyromonas gingivalis W83 [CP025932]
1387638
1387552
-
Leu
TAG
-
¡û
>W1910371038
FUFB01000067
Bacteroidota
Porphyromonas gingivalis 3_3 [FUFB]
30630
30544
-
Leu
TAG
[ENA]
¡û
>W1910371066
FUFC01000018
Bacteroidota
Porphyromonas gingivalis 3A1 [FUFC]
104137
104055
-
Leu
TAG
[ENA]
¡û
>W1910371106
FUFD01000032
Bacteroidota
Porphyromonas gingivalis 7BTORR [FUFD]
23223
23305
+
Leu
TAG
[ENA]
¡û
>W1910371153
FUFE01000067
Bacteroidota
Porphyromonas gingivalis 11A [FUFE]
23237
23323
+
Leu
TAG
[ENA]
¡û
>W1910371177
FUFF01000005
Bacteroidota
Porphyromonas gingivalis A7A1_28 [FUFF]
4107
4021
-
Leu
TAG
[ENA]
¡û
>W1910371218
FUFG01000003
Bacteroidota
Porphyromonas gingivalis 84_3 [FUFG]
23078
23164
+
Leu
TAG
[ENA]
¡û
>W1910371259
FUFH01000009
Bacteroidota
Porphyromonas gingivalis ATCC 49417 [FUFH]
24921
25007
+
Leu
TAG
[ENA]
¡û
>W1910371332
FUFI01000041
Bacteroidota
Porphyromonas gingivalis SU60 [FUFI]
4312
4230
-
Leu
TAG
[ENA]
¡û
>W1910371348
FUFJ01000018
Bacteroidota
Porphyromonas gingivalis AFR5B1 [FUFJ]
26828
26910
+
Leu
TAG
[ENA]
¡û
>W1910372591
FUGF01000063
Bacteroidota
Porphyromonas gingivalis 15_9 [FUGF]
23241
23327
+
Leu
TAG
[ENA]
¡û
>W1910372595
FUGG01000003
Bacteroidota
Porphyromonas gingivalis 13_1 [FUGG]
25822
25908
+
Leu
TAG
[ENA]
¡û
>W1911247375
NSLL01000011
Bacteroidota
Porphyromonas gingivalis WW5127 [NSLL]
23280
23362
+
Leu
TAG
[ENA]
¡û
>W1911247403
NSLM01000002
Bacteroidota
Porphyromonas gingivalis WW5019 [NSLM]
148382
148296
-
Leu
TAG
[ENA]
¡û
>W1911247466
NSLN01000022
Bacteroidota
Porphyromonas gingivalis WW3039 [NSLN]
23193
23275
+
Leu
TAG
[ENA]
¡û
>W1911247485
NSLO01000001
Bacteroidota
Porphyromonas gingivalis WW3102 [NSLO]
92335
92253
-
Leu
TAG
[ENA]
¡û
>W1911247552
NSLP01000027
Bacteroidota
Porphyromonas gingivalis WW3040 [NSLP]
4377
4291
-
Leu
TAG
[ENA]
¡û
>W1911247600
NSLQ01000023
Bacteroidota
Porphyromonas gingivalis WW2952 [NSLQ]
30667
30581
-
Leu
TAG
[ENA]
¡û
>W1911247632
NSLR01000013
Bacteroidota
Porphyromonas gingivalis WW2931 [NSLR]
26201
26283
+
Leu
TAG
[ENA]
¡û
>W1911247671
NSLS01000007
Bacteroidota
Porphyromonas gingivalis WW2903 [NSLS]
25797
25883
+
Leu
TAG
[ENA]
¡û
>W1911247723
NSLT01000020
Bacteroidota
Porphyromonas gingivalis WW2885 [NSLT]
16467
16381
-
Leu
TAG
[ENA]
¡û
>W1911247771
NSLU01000061
Bacteroidota
Porphyromonas gingivalis WW2881 [NSLU]
12206
12120
-
Leu
TAG
[ENA]
¡û
>W1911247807
NSLV01000017
Bacteroidota
Porphyromonas gingivalis WW2866 [NSLV]
42674
42592
-
Leu
TAG
[ENA]
¡û
>W1911247868
NSLW01000024
Bacteroidota
Porphyromonas gingivalis WW2842 [NSLW]
4638
4552
-
Leu
TAG
[ENA]
¡û
>W1911247898
NSLX01000021
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
23983
24069
+
Leu
TAG
[ENA]
¡û
>W1911709138
QPGS01000033
Bacteroidota
Porphyromonas gingivalis 381OKJP [QPGS]
4630
4548
-
Leu
TAG
[ENA]
¡û
>W1810573711
QEKY01000002
Bacteroidota
Porphyromonas loveana DSM 28520 [QEKY]
176270
176188
-
Leu
TAG
[ENA]
¡û
>C151089062
CP011995
Bacteroidota
Porphyromonas gingivalis A7436 [CP011995]
1132879
1132793
-
Leu
TAG
-
¡û
>C151089110
CP011996
Bacteroidota
Porphyromonas gingivalis AJW4 [CP011996]
1047788
1047702
-
Leu
TAG
-
¡û
>C11117297
AP012203
Bacteroidota
Porphyromonas gingivalis TDC60 [AP012203]
927990
928076
+
Leu
TAG
[Ensembl]
¡û
>W1511328359
JQJE01000021
Bacteroidota
Porphyromonas gulae OH3161B [JQJE]
96696
96778
+
Leu
TAG
[ENA]
¡û
>W1511336143
JQZY01000027
Bacteroidota
Porphyromonas sp. COT-052 OH4946 [JQZY]
68641
68555
-
Leu
TAG
[ENA]
¡û
>W1511336350
JRAE01000014
Bacteroidota
Porphyromonas gulae COT-052_OH2199 [JRAE]
4132
4050
-
Leu
TAG
[ENA]
¡û
>W1511336394
JRAF01000014
Bacteroidota
Porphyromonas gulae COT-052 OH3498 [JRAF]
4281
4367
+
Leu
TAG
[ENA]
¡û
>W1511336439
JRAG01000012
Bacteroidota
Porphyromonas gulae COT-052 OH1355 [JRAG]
150435
150517
+
Leu
TAG
[ENA]
¡û
>W1511336547
JRAI01000059
Bacteroidota
Porphyromonas gulae COT-052 OH1451 [JRAI]
298
212
-
Leu
TAG
[ENA]
¡û
>W1511336590
JRAJ01000011
Bacteroidota
Porphyromonas gulae COT-052 OH2179 [JRAJ]
174924
175010
+
Leu
TAG
[ENA]
¡û
>W1511336630
JRAK01000096
Bacteroidota
Porphyromonas gulae COT-052 OH3439 [JRAK]
4118
4036
-
Leu
TAG
[ENA]
¡û
>W1511336682
JRAL01000046
Bacteroidota
Porphyromonas gulae COT-052 OH4119 [JRAL]
22770
22684
-
Leu
TAG
[ENA]
¡û
>W1511336825
JRAQ01000019
Bacteroidota
Porphyromonas gulae COT-052 OH3471 [JRAQ]
38650
38732
+
Leu
TAG
[ENA]
¡û
>W1511336945
JRAT01000012
Bacteroidota
Porphyromonas gulae COT-052 OH3856 [JRAT]
4521
4435
-
Leu
TAG
[ENA]
¡û
>W1511343912
JRFD01000011
Bacteroidota
Porphyromonas gulae COT-052 OH2857 [JRFD]
70107
70193
+
Leu
TAG
[ENA]
¡û
>C161018153
CP007756
Bacteroidota
Porphyromonas gingivalis HG66 [CP007756]
1527668
1527582
-
Leu
TAG
[Ensembl]
¡û
>C161046951
CP012889
Bacteroidota
Porphyromonas gingivalis 381 [CP012889]
1093601
1093515
-
Leu
TAG
-
¡û
>C161051796
CP013131
Bacteroidota
Porphyromonas gingivalis A7A1-28 [CP013131]
1078342
1078256
-
Leu
TAG
-
¡û
>W121073562
AJZS01000059
Bacteroidota
Porphyromonas gingivalis W50 [AJZS]
1936
1850
-
Leu
TAG
[ENA]
¡û
>W1610060543
BCBV01000068
Bacteroidota
Porphyromonas gingivalis [BCBV]
14373
14291
-
Leu
TAG
[ENA]
¡û
>W1610784245
LOEL01000013
Bacteroidota
Porphyromonas gingivalis [LOEL]
23499
23585
+
Leu
TAG
[ENA]
¡û
>W1710017888
ASYM01000077
Bacteroidota
Porphyromonas gingivalis SJD4 [ASYM]
4088
4002
-
Leu
TAG
[ENA]
¡û
>W1710017914
ASYN01000026
Bacteroidota
Porphyromonas gingivalis SJD5 [ASYN]
4089
4003
-
Leu
TAG
[ENA]
¡û
>W1710017949
ASYO01000001
Bacteroidota
Porphyromonas gingivalis SJD11 [ASYO]
4048
3966
-
Leu
TAG
[ENA]
¡û
>W1710018012
ASYP01000069
Bacteroidota
Porphyromonas gingivalis SJD12 [ASYP]
4129
4043
-
Leu
TAG
[ENA]
¡û
>W1710057798
BCBV01000068
Bacteroidota
Porphyromonas gingivalis [BCBV]
14373
14291
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK