This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99414 (67 seq.)
>W1710859308
LMCB01000004
Alphaproteobacteria
Pseudovibrio axinellae [LMCB]
121419
121335
-
Tyr
GTA
[ENA]
¡û
>W1710859516
LMCE01000094
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
142522
142438
-
Tyr
GTA
[ENA]
¡û
>W1710859521
LMCE01000095
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
103909
103825
-
Tyr
GTA
[ENA]
¡û
>W1710859578
LMCF01000212
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
51897
51813
-
Tyr
GTA
[ENA]
¡û
>W1710859583
LMCF01000215
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
24242
24158
-
Tyr
GTA
[ENA]
¡û
>W1710859698
LMCH01000057
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
123112
123028
-
Tyr
GTA
[ENA]
¡û
>W1710859699
LMCH01000057
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
63631
63547
-
Tyr
GTA
[ENA]
¡û
>W1710926976
LOEV01000184
Alphaproteobacteria
Alphaproteobacteria bacterium BRH_c36 [LOEV]
709
625
-
Tyr
GTA
[ENA]
¡û
>W1711167006
LVVZ01000005
Alphaproteobacteria
Pseudovibrio exalbescens [LVVZ]
44315
44231
-
Tyr
GTA
[ENA]
¡û
>W1711167007
LVVZ01000005
Alphaproteobacteria
Pseudovibrio exalbescens [LVVZ]
1089
1005
-
Tyr
GTA
[ENA]
¡û
>W1711424962
MIEL01000015
Alphaproteobacteria
Pseudovibrio brasiliensis Ab134 [MIEL]
637
553
-
Tyr
GTA
[ENA]
¡û
>W1711424984
MIEL01000038
Alphaproteobacteria
Pseudovibrio brasiliensis Ab134 [MIEL]
54172
54088
-
Tyr
GTA
[ENA]
¡û
>W1711475575
MJUX01000008
Alphaproteobacteria
Acuticoccus yangtzensis [MJUX]
161613
161529
-
Tyr
GTA
[ENA]
¡û
>C171100643
CP019875
Alphaproteobacteria
Komagataeibacter nataicola RZS01 [CP019875]
2206686
2206602
-
Tyr
GTA
-
¡û
>C171115925
CP021112
Alphaproteobacteria
Pseudorhodoplanes sinuspersici RIPI110 [CP021112]
4330177
4330261
+
Tyr
GTA
-
¡û
>w022249
AAWJ01000001
Alphaproteobacteria
Parvibaculum lavamentivorans DS-1 [AAWJ]
3133972
3134056
+
Tyr
GTA
[ENA]
¡û
>WENV180309841
OBJS01056294
[OBJS] beach sand metagenome; beach sand
169
85
-
Tyr
GTA
[ENA]
¢þ
>WENV181169548
OEIV010003976
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
4908
4992
+
Tyr
GTA
[ENA]
¢þ
>WENV181172149
OEIV010513026
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
137
53
-
Tyr
GTA
[ENA]
¢þ
>WENV181322534
OFKS01007080
[OFKS] marine metagenome; sea ice
291
375
+
Tyr
GTA
[ENA]
¢þ
>WENV181324423
OFLE01007651
[OFLE] marine metagenome; sea ice
217
133
-
Tyr
GTA
[ENA]
¢þ
>C08007340
CP000774
Alphaproteobacteria
Parvibaculum lavamentivorans DS-1 [CP000774]
2927938
2928022
+
Tyr
GTA
[Ensembl]
¡û
>WENV183615764
OOEB01135592
[OOEB] marine metagenome; sea ice
186
102
-
Tyr
GTA
[ENA]
¢þ
>WENV183616984
OOEE01022256
[OOEE] marine metagenome; sea ice
128
44
-
Tyr
GTA
[ENA]
¢þ
>WENV183621304
OOFT01043978
[OOFT] marine metagenome; sea ice
366
282
-
Tyr
GTA
[ENA]
¢þ
>WENV183628120
OOGM01021270
[OOGM] marine metagenome; sea ice
408
324
-
Tyr
GTA
[ENA]
¢þ
>WENV183630647
OOGU01000072
[OOGU] marine metagenome; sea ice
8903
8987
+
Tyr
GTA
[ENA]
¢þ
>WENV183631452
OOGU01117079
[OOGU] marine metagenome; sea ice
296
381
+
Tyr
GTA
[ENA]
¢þ
>WENV183663372
ORJL010278160
[ORJL] groundwater metagenome; groundwater
441
357
-
Tyr
GTA
[ENA]
¢þ
>WENV170003065
AGTN01215879
[AGTN] bioreactor metagenome; poplar biomass
218
134
-
Tyr
GTA
[ENA]
¢þ
>WENV170016313
AZIJ01023165
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
10842
10926
+
Tyr
GTA
[ENA]
¢þ
>WENV170405223
CEUG01079639
[CEUG] marine metagenome genome assembly TARA_128_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
385
301
-
Tyr
GTA
[ENA]
¢þ
>WENV170470397
CEVF01261295
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
427
511
+
Tyr
GTA
[ENA]
¢þ
>WENV170553597
CXWK01024639
[CXWK] wastewater metagenome; activated sludge
1302
1218
-
Tyr
GTA
[ENA]
¢þ
>WENV170710290
LNFM01001471
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
68628
68544
-
Tyr
GTA
[ENA]
¢þ
>WENV170808304
MDSW01112775
[MDSW] marine metagenome; seawater
437
353
-
Tyr
GTA
[ENA]
¢þ
>WENV170874275
MDTC01000897
[MDTC] marine metagenome; seawater
419
335
-
Tyr
GTA
[ENA]
¢þ
>WENV170923633
MDTG01052553
[MDTG] marine metagenome; seawater
437
353
-
Tyr
GTA
[ENA]
¢þ
>WENV170962410
MRWF01014988
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
793
709
-
Tyr
GTA
[ENA]
¢þ
>WENV170962699
MRWF01023992
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
944
860
-
Tyr
GTA
[ENA]
¢þ
>WENV170963427
MRWG01000179
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
453
369
-
Tyr
GTA
[ENA]
¢þ
>WENV170964692
MRWG01031340
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
556
472
-
Tyr
GTA
[ENA]
¢þ
>WENV170964773
MRWG01042148
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
412
328
-
Tyr
GTA
[ENA]
¢þ
>C181227360
LT960614
Alphaproteobacteria
Hartmannibacter diazotrophicus type strain: E19 [LT960614]
1623016
1623100
+
Tyr
GTA
-
¡û
>W1910929242
NIRT01000011
Alphaproteobacteria
Komagataeibacter nataicola LMG 1536 [NIRT]
17046
16962
-
Tyr
GTA
[ENA]
¡û
>W1911148427
NPEV01000048
Alphaproteobacteria
Rhodobium orientis DSM 11290 [NPEV]
551
467
-
Tyr
GTA
[ENA]
¡û
>W1810489482
QBBV01000001
Alphaproteobacteria
Acuticoccus kandeliae J103 [QBBV]
121231
121315
+
Tyr
GTA
[ENA]
¡û
>W1810489562
QBBW01000008
Alphaproteobacteria
Acuticoccus yangtzensis JL1095 [QBBW]
161718
161634
-
Tyr
GTA
[ENA]
¡û
>W1810624932
QHHQ01000001
Alphaproteobacteria
Acuticoccus sediminis PTG4-2 [QHHQ]
189839
189755
-
Tyr
GTA
[ENA]
¡û
>W1810762237
QPMH01000010
Alphaproteobacteria
Ferruginivarius sediminum WD2A32 [QPMH]
43974
44058
+
Tyr
GTA
[ENA]
¡û
>C151104266
LN829118
Alphaproteobacteria
Candidatus Filomicrobium marinum strain W [LN829118]
418243
418327
+
Tyr
GTA
[Ensembl]
¡û
>C151104312
LN829119
Alphaproteobacteria
Candidatus Filomicrobium marinum Y [LN829119]
418238
418322
+
Tyr
GTA
[Ensembl]
¡û
>W10112688
ADFF01000003
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [ADFF]
173531
173447
-
Tyr
GTA
[ENA]
¡û
>W11115915
ADFF01000003
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [ADFF]
173531
173447
-
Tyr
GTA
[ENA]
¡û
>W1610721654
LMCB01000004
Alphaproteobacteria
Pseudovibrio axinellae [LMCB]
121419
121335
-
Tyr
GTA
[ENA]
¡û
>W1610721862
LMCE01000094
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
142522
142438
-
Tyr
GTA
[ENA]
¡û
>W1610721867
LMCE01000095
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
103909
103825
-
Tyr
GTA
[ENA]
¡û
>W1610721924
LMCF01000212
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
51897
51813
-
Tyr
GTA
[ENA]
¡û
>W1610721929
LMCF01000215
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
24242
24158
-
Tyr
GTA
[ENA]
¡û
>W1610722044
LMCH01000057
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
123112
123028
-
Tyr
GTA
[ENA]
¡û
>W1610722045
LMCH01000057
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
63631
63547
-
Tyr
GTA
[ENA]
¡û
>W1610784518
LOEV01000184
Alphaproteobacteria
Alphaproteobacteria bacterium BRH_c36 [LOEV]
709
625
-
Tyr
GTA
[ENA]
¡û
>W1710015715
AQRB01000004
Alphaproteobacteria
Stappia sp. 22II-S9-Z10 [AQRB]
86886
86970
+
Tyr
GTA
[ENA]
¡û
>W1710524922
FNJC01000002
Alphaproteobacteria
Filomicrobium insigne [FNJC]
4262
4178
-
Tyr
GTA
[ENA]
¡û
>W1710527530
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
4343821
4343905
+
Tyr
GTA
[ENA]
¡û
>W1710527531
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
4379672
4379756
+
Tyr
GTA
[ENA]
¡û
>W1710550700
FOFM01000005
Alphaproteobacteria
Pseudovibrio axinellae [FOFM]
140855
140771
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK