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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99905 (67 seq.)
>W1711221609
LXRG01000098
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
118907
118994
+
Ser
GGA
[ENA]
¡û
>W1711434616
MINL01000001
Gammaproteobacteria
Halomonas sp. QHL1 [MINL]
4044867
4044954
+
Ser
GGA
[ENA]
¡û
>W131095876
AOPO01000013
Gammaproteobacteria
Halomonas titanicae BH1 [AOPO]
50848
50935
+
Ser
GGA
[ENA]
¡û
>W141252165
CBRE010000048
Gammaproteobacteria
Halomonas sp. A3H3 [CBRE]
31158
31071
-
Ser
GGA
[ENA]
¡û
>WENV182547906
OJBU01001770
[OJBU] seawater metagenome; Sea water
544
457
-
Ser
GGA
[ENA]
¡û
>WENV182548851
OJBX01000533
[OJBX] seawater metagenome; Sea water
4160
4247
+
Ser
GGA
[ENA]
¡û
>WENV182568013
OJEP01011601
[OJEP] seawater metagenome; Sea water
632
719
+
Ser
GGA
[ENA]
¡û
>WENV182585508
OJHH01041381
[OJHH] seawater metagenome; Sea water
238
325
+
Ser
GGA
[ENA]
¡û
>WENV182591177
OJIL01000200
[OJIL] seawater metagenome; Sea water
364
277
-
Ser
GGA
[ENA]
¡û
>WENV182591634
OJIO01001053
[OJIO] seawater metagenome; Sea water
9444
9357
-
Ser
GGA
[ENA]
¡û
>W141275883
JADJ01000002
Gammaproteobacteria
Halomonas sp. 23_GOM-1509m [JADJ]
109052
108965
-
Ser
GGA
[ENA]
¡û
>WENV183062446
OLID01012929
[OLID] seawater metagenome; Sea water
793
880
+
Ser
GGA
[ENA]
¡û
>WENV170014258
AXCI01003336
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
26712
26625
-
Ser
GGA
[ENA]
¡û
>WENV170112397
CEGE01004886
[CEGE] microbial mat metagenome; grass silage
4148
4235
+
Ser
GGA
[ENA]
¡û
>WENV170112477
CEGF01000889
[CEGF] microbial mat metagenome; grass silage
625
712
+
Ser
GGA
[ENA]
¡û
>WENV170692887
LGOV01041841
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
3556
3643
+
Ser
GGA
[ENA]
¡û
>C191165514
CP039374
Gammaproteobacteria
Halomonas titanicae ANRCS81 [CP039374]
1434
1347
-
Ser
GGA
-
¡û
>W141564644
JIAY01000003
Gammaproteobacteria
Halomonas sp. 19A_GOM-1509m [JIAY]
109052
108965
-
Ser
GGA
[ENA]
¡û
>W141754435
JNVS01000007
Gammaproteobacteria
Halomonas sp. KO116 [JNVS]
11445
11358
-
Ser
GGA
[ENA]
¡û
>W141818879
JQLV01000001
Gammaproteobacteria
Halomonas sp. TG39a [JQLV]
1028205
1028292
+
Ser
GGA
[ENA]
¡û
>W1910006958
BBQX01000036
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
4090
4177
+
Ser
GGA
[ENA]
¡û
>W1911148570
NPEY01000008
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
43092
43005
-
Ser
GGA
[ENA]
¡û
>W1810156461
PJBI01000036
Gammaproteobacteria
Halomonas sp. Choline-3u-9 [PJBI]
109055
108968
-
Ser
GGA
[ENA]
¡û
>W1810157201
PJBT01000020
Gammaproteobacteria
Halomonas sp. MES3-P3E [PJBT]
287211
287298
+
Ser
GGA
[ENA]
¡û
>W1810758309
QPIJ01000026
Gammaproteobacteria
Halomonas rituensis TQ8S [QPIJ]
35559
35472
-
Ser
GGA
[ENA]
¡û
>C151075876
CP011052
Gammaproteobacteria
Halomonas sp. KO116 [CP011052]
3308694
3308607
-
Ser
GGA
[Ensembl]
¡û
>C151104168
LN813019
Gammaproteobacteria
Halomonas sp. R57-5 [LN813019]
3595387
3595300
-
Ser
GGA
-
¡û
>W2010075316
BBQX01000036
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
4090
4177
+
Ser
GGA
[ENA]
¡û
>W2010103636
BJXV01000028
Gammaproteobacteria
Halovibrio variabilis NBRC 102410 [BJXV]
19048
18961
-
Ser
GGA
[ENA]
¡û
>W2010311115
CABWMN010000026
Gammaproteobacteria
Halomonas sp. 98 [CABWMN]
481400
481487
+
Ser
GGA
[ENA]
¡û
>W2010311144
CABWMO010000003
Gammaproteobacteria
Halomonas sp. 153 [CABWMO]
287077
287164
+
Ser
GGA
[ENA]
¡û
>W2010640520
JABWCV010000005
Gammaproteobacteria
Halomonas sp. QX-1 [JABWCV]
79183
79270
+
Ser
GGA
[ENA]
¡û
>W2010643379
JABWTB010000011
Gammaproteobacteria
Halomonas titanicae TAT1 [JABWTB]
89439
89352
-
Ser
GGA
[ENA]
¡û
>W2010673394
JACCDE010000004
Gammaproteobacteria
Halomonas glaciei DD39 [JACCDE]
211275
211362
+
Ser
GGA
[ENA]
¡û
>W2010676044
JACCGK010000019
Gammaproteobacteria
Halomonas sp. QX-2 [JACCGK]
50943
51030
+
Ser
GGA
[ENA]
¡û
>W2011021501
NPEY01000008
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
43092
43005
-
Ser
GGA
[ENA]
¡û
>W2011657168
SOCZ01000021
Gammaproteobacteria
Halomonas alkaliantarctica CRSS [SOCZ]
76647
76734
+
Ser
GGA
[ENA]
¡û
>W2011978516
VCQL01000005
Gammaproteobacteria
Halomonas sp. ATBC28 [VCQL]
308942
309029
+
Ser
GGA
[ENA]
¡û
>W2012094259
VNFE01000008
Gammaproteobacteria
Halomonas titanicae SM1922 [VNFE]
141603
141516
-
Ser
GGA
[ENA]
¡û
>W2012352319
WJPH01000003
Gammaproteobacteria
Halomonas sp. MG34 [WJPH]
987897
987984
+
Ser
GGA
[ENA]
¡û
>W2012434143
WTKP01000016
Gammaproteobacteria
Halomonas sp. ZH2S [WTKP]
5816
5729
-
Ser
GGA
[ENA]
¡û
>W2110098321
CAJFDU010000025
Gammaproteobacteria
Halomonas sp. 113 [CAJFDU]
474545
474632
+
Ser
GGA
[ENA]
¡û
>W2110098440
CAJFDW010000024
Gammaproteobacteria
Halomonas sp. 59 [CAJFDW]
757257
757344
+
Ser
GGA
[ENA]
¡û
>W2110098566
CAJFDZ010000006
Gammaproteobacteria
Halomonas sp. 156 [CAJFDZ]
121032
120945
-
Ser
GGA
[ENA]
¡û
>W2110098729
CAJFEC010000028
Gammaproteobacteria
Halomonas sp. I3 [CAJFEC]
287077
287164
+
Ser
GGA
[ENA]
¡û
>W2110176998
JABFAT010000008
Gammaproteobacteria
Halomonas sp. KRD171 [JABFAT]
790401
790488
+
Ser
GGA
[ENA]
¡û
>W2110220298
JACIVL010000032
Gammaproteobacteria
Halomonas neptunia DSM 15720 [JACIVL]
5262
5175
-
Ser
GGA
[ENA]
¡û
>W2110546397
JAGGRM010000010
Gammaproteobacteria
Halomonas sp. ISL-104 [JAGGRM]
560
473
-
Ser
GGA
[ENA]
¡û
>W2110546457
JAGGRN010000018
Gammaproteobacteria
Halomonas sp. ISL-106 [JAGGRN]
118907
118994
+
Ser
GGA
[ENA]
¡û
>W2110546476
JAGGRO010000008
Gammaproteobacteria
Halomonas sp. ISL-56 [JAGGRO]
84260
84347
+
Ser
GGA
[ENA]
¡û
>W2110577283
JAGWDL010000001
Gammaproteobacteria
Halomonas boliviensis kknpp38 [JAGWDL]
616079
616166
+
Ser
GGA
[ENA]
¡û
>C201087752
CP040451
Gammaproteobacteria
Halomonas sp. PA16-9 [CP040451]
1545562
1545649
+
Ser
GGA
-
¡û
>C211119364
CP059082
Gammaproteobacteria
Halomonas titanicae SOB56 [CP059082]
4668777
4668690
-
Ser
GGA
-
¡û
>C231136168
CP074200
Gammaproteobacteria
Halomonas sp. FeN2 [CP074200]
4009586
4009673
+
Ser
GGA
-
¡û
>C231226782
CP086344
Gammaproteobacteria
Halomonas profundus 13 [CP086344]
1495674
1495761
+
Ser
GGA
-
¡û
>C231534338
CP110535
Gammaproteobacteria
Halomonas sp. BDJS001 [CP110535]
1403036
1403123
+
Ser
GGA
-
¡û
>W2110776114
VOGA01000018
Gammaproteobacteria
Halomonas sp. SBBP1 [VOGA]
4625
4712
+
Ser
GGA
[ENA]
¡û
>C231649479
CP122961
Gammaproteobacteria
Halomonas alkaliantarctica MSP3 [CP122961]
1308106
1308193
+
Ser
GGA
-
¡û
>W2130009099
CAJSTI010001422
Gammaproteobacteria
Halomonas elongata [CAJSTI]
1
88
+
Ser
GGA
[ENA]
¡û
>C241167480
CP054580
Gammaproteobacteria
Vreelandella titanicae GPM3 [CP054580]
440011
440098
+
Ser
GGA
-
¡û
>C241295108
CP130610
Gammaproteobacteria
Halomonas sp. HAL1 [CP130610]
1248733
1248820
+
Ser
GGA
-
¡û
>W1511479181
JWHY01000002
Gammaproteobacteria
Halomonas sp. KHS3 [JWHY]
996503
996590
+
Ser
GGA
[ENA]
¡û
>W11180601
AGIB01000060
Gammaproteobacteria
Halomonas sp. HAL1 [AGIB]
4379
4466
+
Ser
GGA
[ENA]
¡û
>W121016429
AGQZ01000004
Gammaproteobacteria
Halomonas boliviensis LC1 [AGQZ]
15342
15255
-
Ser
GGA
[ENA]
¡û
>W1611006078
LXRG01000098
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
118907
118994
+
Ser
GGA
[ENA]
¡û
>W1710518719
FNEF01000001
Gammaproteobacteria
Halomonas titanicae DSM 26667 [FNEF]
337904
337991
+
Ser
GGA
[ENA]
¡û
>W1710628359
JPUA01000034
Gammaproteobacteria
Halomonas campaniensis [JPUA]
852019
852106
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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