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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99909 (27 seq.)
>W1711008507
LQQA01000030
Actinomycetota
Mycolicibacterium wolinskyi [LQQA]
12606
12689
+
Tyr
GTA
[ENA]
¡û
>W1711276264
LZHZ01000061
Actinomycetota
Mycobacterium sp. ACS1612 [LZHZ]
84664
84581
-
Tyr
GTA
[ENA]
¡û
>W1711773250
MVIB01000007
Actinomycetota
Mycolicibacterium moriokaense [MVIB]
44960
44875
-
Tyr
GTA
[ENA]
¡û
>W131087201
AOCJ01000023
Actinomycetota
Mycolicibacterium smegmatis MKD8 [AOCJ]
13200
13285
+
Tyr
GTA
[ENA]
¡û
>C014015
CP000480
Actinomycetota
Mycolicibacterium smegmatis MC2 155 [CP000480]
1228393
1228478
+
Tyr
GTA
[Ensembl]
¡û
>C014428
CP000511
Actinomycetota
Mycolicibacterium vanbaalenii PYR-1 [CP000511]
1025690
1025772
+
Tyr
GTA
[Ensembl]
¡û
>WENV180292881
OBIV01686142
[OBIV] soil metagenome; Clay
167
82
-
Tyr
GTA
[ENA]
¢þ
>WENV181168521
OEIU01435095
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
102
17
-
Tyr
GTA
[ENA]
¢þ
>W141261556
CCAW010000006
Actinomycetota
Mycolicibacterium austroafricanum [CCAW]
39886
39803
-
Tyr
GTA
[ENA]
¡û
>W141283015
JAJD01000108
Actinomycetota
Mycolicibacterium smegmatis MC2 51 [JAJD]
100711
100796
+
Tyr
GTA
[ENA]
¡û
>WENV183636083
OOJJ01064442
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
260
343
+
Tyr
GTA
[ENA]
¢þ
>WENV183636476
OOKD01006301
[OOKD] human gut metagenome; Skin biopsy
419
336
-
Tyr
GTA
[ENA]
¢þ
>WENV170724924
LSQX01323960
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
54856
54939
+
Tyr
GTA
[ENA]
¢þ
>W09105292
AAPF01000001
Actinomycetota
Mycolicibacterium vanbaalenii PYR-1 [AAPF]
1082654
1082737
+
Tyr
GTA
[ENA]
¡û
>C181155679
CP027541
Actinomycetota
Mycolicibacterium smegmatis MKD8 [CP027541]
1253170
1253254
+
Tyr
GTA
-
¡û
>W1911503436
OESG01000013
Actinomycetota
Mycobacterium sp. 3519A [OESG]
85593
85676
+
Tyr
GTA
[ENA]
¡û
>W1810338755
PUTU01001248
Actinomycetota
Mycolicibacterium austroafricanum ITM-2016-00315 [PUTU]
84587
84504
-
Tyr
GTA
[ENA]
¡û
>C151052859
CP009494
Actinomycetota
Mycolicibacterium smegmatis MC2 155 [CP009494]
1228407
1228492
+
Tyr
GTA
[Ensembl]
¡û
>C151052906
CP009495
Actinomycetota
Mycolicibacterium smegmatis INHR1 [CP009495]
1228417
1228502
+
Tyr
GTA
[Ensembl]
¡û
>C151052953
CP009496
Actinomycetota
Mycolicibacterium smegmatis INHR2 [CP009496]
1228420
1228505
+
Tyr
GTA
[Ensembl]
¡û
>C121001607
CP001663
Actinomycetota
Mycolicibacterium smegmatis MC2 155 [CP001663]
1230007
1230092
+
Tyr
GTA
-
¡û
>C161031084
CP011022
Actinomycetota
Mycolicibacterium neoaurum NRRL B-3805 [CP011022]
1252770
1252853
+
Tyr
GTA
-
¡û
>C131002012
CP003078
Actinomycetota
Mycobacterium sp. JS623 [CP003078]
720816
720901
+
Tyr
GTA
[Ensembl]
¡û
>W1610617542
LGTW01000036
Actinomycetota
Mycolicibacterium wolinskyi [LGTW]
5154
5071
-
Tyr
GTA
[ENA]
¡û
>W1610725620
LMEZ01000004
Actinomycetota
Mycobacterium sp. Root135 [LMEZ]
299430
299347
-
Tyr
GTA
[ENA]
¡û
>W1611035549
LZHZ01000061
Actinomycetota
Mycobacterium sp. ACS1612 [LZHZ]
84664
84581
-
Tyr
GTA
[ENA]
¡û
>W1710743129
LGTW01000036
Actinomycetota
Mycolicibacterium wolinskyi [LGTW]
5154
5071
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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