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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = CAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.116378 (64 seq.)
>WENV180359544
OBNS01001570
[OBNS] marine metagenome; Seawater
633
717
+
Leu
CAG
[ENA]
¢þ
>WENV180365219
OBOB01039389
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
240
324
+
Leu
CAG
[ENA]
¢þ
>WENV180381613
OBOS01004762
[OBOS] marine metagenome; ENVO 00002150
896
812
-
Leu
CAG
[ENA]
¢þ
>WENV180391686
OBPN01020571
[OBPN] marine metagenome; seawater
524
440
-
Leu
CAG
[ENA]
¢þ
>WENV182540389
OJAJ01000114
[OJAJ] seawater metagenome; Sea water
4989
4905
-
Leu
CAG
[ENA]
¢þ
>WENV182540804
OJAQ01000001
[OJAQ] seawater metagenome; Sea water
35369
35285
-
Leu
CAG
[ENA]
¢þ
>WENV182542752
OJAZ01001651
[OJAZ] seawater metagenome; Sea water
6279
6363
+
Leu
CAG
[ENA]
¢þ
>WENV182544231
OJBF01000008
[OJBF] seawater metagenome; Sea water
8872
8956
+
Leu
CAG
[ENA]
¢þ
>WENV182544469
OJBG01004414
[OJBG] seawater metagenome; Sea water
309
393
+
Leu
CAG
[ENA]
¢þ
>WENV182545629
OJBN01009809
[OJBN] seawater metagenome; Sea water
38
122
+
Leu
CAG
[ENA]
¢þ
>WENV182548444
OJBW01000085
[OJBW] seawater metagenome; Sea water
2849
2765
-
Leu
CAG
[ENA]
¢þ
>WENV182550218
OJBZ01013069
[OJBZ] seawater metagenome; Sea water
493
577
+
Leu
CAG
[ENA]
¢þ
>WENV182553142
OJCR01000106
[OJCR] seawater metagenome; Sea water
11931
12015
+
Leu
CAG
[ENA]
¢þ
>WENV182556530
OJDG01014521
[OJDG] seawater metagenome; Sea water
133
49
-
Leu
CAG
[ENA]
¢þ
>WENV182556989
OJDI01000182
[OJDI] seawater metagenome; Sea water
18295
18379
+
Leu
CAG
[ENA]
¢þ
>WENV182561568
OJDX01000003
[OJDX] seawater metagenome; Sea water
40307
40223
-
Leu
CAG
[ENA]
¢þ
>WENV182561903
OJDY01000003
[OJDY] seawater metagenome; Sea water
40475
40391
-
Leu
CAG
[ENA]
¢þ
>WENV182562647
OJEA01000006
[OJEA] seawater metagenome; Sea water
29883
29967
+
Leu
CAG
[ENA]
¢þ
>WENV182563037
OJEB01000007
[OJEB] seawater metagenome; Sea water
18357
18441
+
Leu
CAG
[ENA]
¢þ
>WENV182564020
OJEE01000003
[OJEE] seawater metagenome; Sea water
92524
92608
+
Leu
CAG
[ENA]
¢þ
>WENV182568995
OJEY01000006
[OJEY] seawater metagenome; Sea water
39805
39721
-
Leu
CAG
[ENA]
¢þ
>WENV182569714
OJFB01000086
[OJFB] seawater metagenome; Sea water
18354
18270
-
Leu
CAG
[ENA]
¢þ
>WENV182571075
OJFG01000258
[OJFG] seawater metagenome; Sea water
859
943
+
Leu
CAG
[ENA]
¢þ
>WENV182574563
OJFS01000026
[OJFS] seawater metagenome; Sea water
55810
55894
+
Leu
CAG
[ENA]
¢þ
>WENV182576668
OJFY01001148
[OJFY] seawater metagenome; Sea water
614
530
-
Leu
CAG
[ENA]
¢þ
>WENV182576921
OJGA01001959
[OJGA] seawater metagenome; Sea water
385
301
-
Leu
CAG
[ENA]
¢þ
>WENV182577921
OJGM01000015
[OJGM] seawater metagenome; Sea water
22486
22570
+
Leu
CAG
[ENA]
¢þ
>WENV182580989
OJGW01045351
[OJGW] seawater metagenome; Sea water
361
445
+
Leu
CAG
[ENA]
¢þ
>WENV182582076
OJHA01000003
[OJHA] seawater metagenome; Sea water
44058
43974
-
Leu
CAG
[ENA]
¢þ
>WENV182582441
OJHB01000146
[OJHB] seawater metagenome; Sea water
6563
6647
+
Leu
CAG
[ENA]
¢þ
>WENV182583165
OJHD01000730
[OJHD] seawater metagenome; Sea water
4230
4146
-
Leu
CAG
[ENA]
¢þ
>WENV182584672
OJHG01004883
[OJHG] seawater metagenome; Sea water
326
410
+
Leu
CAG
[ENA]
¢þ
>WENV182586818
OJHK01006067
[OJHK] seawater metagenome; Sea water
160
76
-
Leu
CAG
[ENA]
¢þ
>WENV182587521
OJHN01000001
[OJHN] seawater metagenome; Sea water
39805
39721
-
Leu
CAG
[ENA]
¢þ
>WENV182592322
OJIR01000010
[OJIR] seawater metagenome; Sea water
38261
38345
+
Leu
CAG
[ENA]
¢þ
>WENV183054508
OLGU01000006
[OLGU] seawater metagenome; Sea water
55787
55871
+
Leu
CAG
[ENA]
¢þ
>WENV183055067
OLGW01003674
[OLGW] seawater metagenome; Sea water
456
540
+
Leu
CAG
[ENA]
¢þ
>WENV183059034
OLHS01001655
[OLHS] seawater metagenome; Sea water
163
247
+
Leu
CAG
[ENA]
¢þ
>WENV183059197
OLHU01000003
[OLHU] seawater metagenome; Sea water
92226
92310
+
Leu
CAG
[ENA]
¢þ
>WENV183060162
OLHX01000004
[OLHX] seawater metagenome; Sea water
37514
37430
-
Leu
CAG
[ENA]
¢þ
>WENV183624104
OOGB01027491
[OOGB] marine metagenome; sea ice
222
138
-
Leu
CAG
[ENA]
¢þ
>WENV170568267
FLMP01026201
[FLMP] seawater metagenome; seawater
190
104
-
Leu
CAG
[ENA]
¢þ
>WENV170572381
FLOH01000798
[FLOH] marine metagenome; water
39163
39077
-
Leu
CAG
[ENA]
¢þ
>WENV170624791
FUWD013187018
[FUWD] metagenome; unknown
13808
13722
-
Leu
CAG
[ENA]
¢þ
>WENV170626714
FUWD013229050
[FUWD] metagenome; unknown
2134
2218
+
Leu
CAG
[ENA]
¢þ
>WENV170626762
FUWD013229343
[FUWD] metagenome; unknown
11864
11950
+
Leu
CAG
[ENA]
¢þ
>WENV170627270
FUWD013232457
[FUWD] metagenome; unknown
23168
23254
+
Leu
CAG
[ENA]
¢þ
>WENV170628123
FUWD013242293
[FUWD] metagenome; unknown
11999
12085
+
Leu
CAG
[ENA]
¢þ
>WENV170628705
FUWD013251419
[FUWD] metagenome; unknown
6846
6930
+
Leu
CAG
[ENA]
¢þ
>WENV170953441
MEHZ011645804
[MEHZ] marine metagenome; marine surface water
12906
12992
+
Leu
CAG
[ENA]
¢þ
>SRA1023359
SRR035084.77663
454 Sequencing (SRP001805)
199
113
-
Leu
CAG
[SRA]
>SRA1023621
SRR035084.138671
454 Sequencing (SRP001805)
293
379
+
Leu
CAG
[SRA]
>SRA1028798
SRR035087.9185
454 Sequencing (SRP001808)
169
255
+
Leu
CAG
[SRA]
>SRA1044476
SRR035092.285750
454 Sequencing (SRP001813)
303
389
+
Leu
CAG
[SRA]
>SRA1046133
SRR035093.242927
454 Sequencing (SRP001814)
17
103
+
Leu
CAG
[SRA]
>SRA1046648
SRR035093.352510
454 Sequencing (SRP001814)
273
359
+
Leu
CAG
[SRA]
>SRA1047601
SRR035093.597453
454 Sequencing (SRP001814)
274
360
+
Leu
CAG
[SRA]
>SRA1047613
SRR035093.601664
454 Sequencing (SRP001814)
274
360
+
Leu
CAG
[SRA]
>SRA1051158
SRR035096.97959
454 Sequencing (SRP001817)
392
308
-
Leu
CAG
[SRA]
>SRA1052506
SRR035098.216591
454 Sequencing (SRP001819)
332
246
-
Leu
CAG
[SRA]
>SRA1052942
SRR035098.304515
454 Sequencing (SRP001819)
253
167
-
Leu
CAG
[SRA]
>SRA1053215
SRR035098.363096
454 Sequencing (SRP001819)
109
23
-
Leu
CAG
[SRA]
>SRA1053371
SRR035098.393445
454 Sequencing (SRP001819)
112
26
-
Leu
CAG
[SRA]
>SRA1053536
SRR035098.431944
454 Sequencing (SRP001819)
235
151
-
Leu
CAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK