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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = TGA
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.7158 (1 seq.)
>SRA1025139
SRR035084.496031
454 Sequencing (SRP001805)
141
234
+
Ser
TGA
[SRA]
Identical group No.7160 (1 seq.)
>SRA1023618
SRR035084.137579
454 Sequencing (SRP001805)
413
504
+
Ser
TGA
[SRA]
Identical group No.25972 (1 seq.)
>SRA1023497
SRR035084.111374
454 Sequencing (SRP001805)
188
99
-
Ser
TGA
[SRA]
Identical group No.25974 (1 seq.)
>SRA1024239
SRR035084.279090
454 Sequencing (SRP001805)
221
132
-
Ser
TGA
[SRA]
Identical group No.39798 (1 seq.)
>SRA1025349
SRR035084.559702
454 Sequencing (SRP001805)
82
172
+
Ser
TGA
[SRA]
Identical group No.61381 (1 seq.)
>SRA1023215
SRR035084.39950
454 Sequencing (SRP001805)
332
421
+
Ser
TGA
[SRA]
Identical group No.61384 (1 seq.)
>SRA1024013
SRR035084.229810
454 Sequencing (SRP001805)
355
444
+
Ser
TGA
[SRA]
Identical group No.81145 (1 seq.)
>SRA1025138
SRR035084.495402
454 Sequencing (SRP001805)
128
40
-
Ser
TGA
[SRA]
Identical group No.81146 (1 seq.)
>SRA1025154
SRR035084.500542
454 Sequencing (SRP001805)
87
173
+
Ser
TGA
[SRA]
Identical group No.81164 (1 seq.)
>SRA1023931
SRR035084.210103
454 Sequencing (SRP001805)
200
111
-
Ser
TGA
[SRA]
Identical group No.101951 (1 seq.)
>SRA1025197
SRR035084.512329
454 Sequencing (SRP001805)
98
13
-
Ser
TGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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