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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = TTA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.484600 (13 seq.)
>WENV170627273
FUWD013232460
[FUWD] metagenome; unknown
22713
22638
-
Sup
TTA
[ENA]
¢þ
>SRA1023140
SRR035084.16585
454 Sequencing (SRP001805)
416
491
+
Sup
TTA
[SRA]
>SRA1023486
SRR035084.109116
454 Sequencing (SRP001805)
476
401
-
Sup
TTA
[SRA]
>SRA1023656
SRR035084.144572
454 Sequencing (SRP001805)
46
121
+
Sup
TTA
[SRA]
>SRA1023836
SRR035084.186851
454 Sequencing (SRP001805)
234
159
-
Sup
TTA
[SRA]
>SRA1023885
SRR035084.199668
454 Sequencing (SRP001805)
234
159
-
Sup
TTA
[SRA]
>SRA1023918
SRR035084.207853
454 Sequencing (SRP001805)
141
66
-
Sup
TTA
[SRA]
>SRA1024218
SRR035084.274349
454 Sequencing (SRP001805)
234
159
-
Sup
TTA
[SRA]
>SRA1024475
SRR035084.333216
454 Sequencing (SRP001805)
344
269
-
Sup
TTA
[SRA]
>SRA1024834
SRR035084.415776
454 Sequencing (SRP001805)
184
259
+
Sup
TTA
[SRA]
>SRA1025090
SRR035084.482587
454 Sequencing (SRP001805)
206
281
+
Sup
TTA
[SRA]
>SRA1028565
SRR035086.359425
454 Sequencing (SRP001807)
186
111
-
Sup
TTA
[SRA]
>SRA1045404
SRR035093.86401
454 Sequencing (SRP001814)
483
408
-
Sup
TTA
[SRA]
Identical group No.573410 (1 seq.)
>SRA1024520
SRR035084.342586
454 Sequencing (SRP001805)
326
251
-
Sup
TTA
[SRA]
Identical group No.672345 (7 seq.)
>WENV170627323
FUWD013232623
[FUWD] metagenome; unknown
173433
173361
-
Sup
TTA
[ENA]
¢þ
>SRA1024457
SRR035084.329641
454 Sequencing (SRP001805)
186
258
+
Sup
TTA
[SRA]
>SRA1025148
SRR035084.498715
454 Sequencing (SRP001805)
84
12
-
Sup
TTA
[SRA]
>SRA1028183
SRR035086.271177
454 Sequencing (SRP001807)
226
154
-
Sup
TTA
[SRA]
>SRA1029618
SRR035087.152076
454 Sequencing (SRP001808)
98
170
+
Sup
TTA
[SRA]
>SRA1050826
SRR035096.27299
454 Sequencing (SRP001817)
209
137
-
Sup
TTA
[SRA]
>SRA1051112
SRR035096.87974
454 Sequencing (SRP001817)
209
137
-
Sup
TTA
[SRA]
Identical group No.726930 (1 seq.)
>SRA1025184
SRR035084.510243
454 Sequencing (SRP001805)
396
324
-
Sup
TTA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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