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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = TTC
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169185 (1 seq.)
>SRA1023430
SRR035084.97374
454 Sequencing (SRP001805)
333
418
+
Glu
TTC
[SRA]
Identical group No.257989 (1 seq.)
>SRA1024796
SRR035084.404169
454 Sequencing (SRP001805)
482
408
-
Glu
TTC
[SRA]
Identical group No.381103 (1 seq.)
>SRA1023991
SRR035084.223602
454 Sequencing (SRP001805)
282
358
+
Glu
TTC
[SRA]
Identical group No.381128 (1 seq.)
>SRA1024716
SRR035084.383726
454 Sequencing (SRP001805)
81
5
-
Glu
TTC
[SRA]
Identical group No.573441 (1 seq.)
>SRA1025121
SRR035084.490834
454 Sequencing (SRP001805)
117
42
-
Glu
TTC
[SRA]
Identical group No.726872 (1 seq.)
>SRA1023252
SRR035084.52240
454 Sequencing (SRP001805)
334
405
+
Glu
TTC
[SRA]
Identical group No.726881 (1 seq.)
>SRA1023475
SRR035084.106313
454 Sequencing (SRP001805)
76
3
-
Glu
TTC
[SRA]
Identical group No.726893 (1 seq.)
>SRA1023730
SRR035084.161989
454 Sequencing (SRP001805)
269
195
-
Glu
TTC
[SRA]
Identical group No.726909 (1 seq.)
>SRA1024328
SRR035084.299448
454 Sequencing (SRP001805)
193
267
+
Glu
TTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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