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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = CAC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300356 (1 seq.)
>SRA1029514
SRR035087.139931
454 Sequencing (SRP001808)
249
175
-
Val
CAC
[SRA]
Identical group No.300379 (1 seq.)
>SRA1029632
SRR035087.153931
454 Sequencing (SRP001808)
402
328
-
Val
CAC
[SRA]
Identical group No.484163 (1 seq.)
>SRA1029544
SRR035087.143626
454 Sequencing (SRP001808)
271
199
-
Val
CAC
[SRA]
Identical group No.672303 (1 seq.)
>SRA1029272
SRR035087.100870
454 Sequencing (SRP001808)
119
45
-
Val
CAC
[SRA]
Identical group No.672415 (1 seq.)
>SRA1030196
SRR035087.240540
454 Sequencing (SRP001808)
255
326
+
Val
CAC
[SRA]
Identical group No.672593 (2 seq.)
>SRA1031690
SRR035087.472070
454 Sequencing (SRP001808)
467
396
-
Val
CAC
[SRA]
>SRA1031844
SRR035087.498377
454 Sequencing (SRP001808)
466
395
-
Val
CAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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