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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = CCT
HIT:
23 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244512 (1 seq.)
>SRA1030960
SRR035087.354917
454 Sequencing (SRP001808)
194
269
+
Arg
CCT
[SRA]
Identical group No.244517 (1 seq.)
>SRA1031176
SRR035087.385667
454 Sequencing (SRP001808)
297
221
-
Arg
CCT
[SRA]
Identical group No.244556 (1 seq.)
>SRA1032189
SRR035087.572245
454 Sequencing (SRP001808)
164
240
+
Arg
CCT
[SRA]
Identical group No.300392 (1 seq.)
>SRA1029736
SRR035087.172990
454 Sequencing (SRP001808)
8
84
+
Arg
CCT
[SRA]
Identical group No.300447 (1 seq.)
>SRA1030049
SRR035087.220769
454 Sequencing (SRP001808)
474
398
-
Arg
CCT
[SRA]
Identical group No.300456 (1 seq.)
>SRA1030114
SRR035087.229702
454 Sequencing (SRP001808)
185
110
-
Arg
CCT
[SRA]
Identical group No.300469 (1 seq.)
>SRA1030213
SRR035087.243689
454 Sequencing (SRP001808)
2
78
+
Arg
CCT
[SRA]
Identical group No.300502 (1 seq.)
>SRA1030371
SRR035087.269140
454 Sequencing (SRP001808)
315
388
+
Arg
CCT
[SRA]
Identical group No.300552 (1 seq.)
>SRA1030670
SRR035087.311865
454 Sequencing (SRP001808)
252
328
+
Arg
CCT
[SRA]
Identical group No.300565 (1 seq.)
>SRA1030755
SRR035087.326932
454 Sequencing (SRP001808)
263
336
+
Arg
CCT
[SRA]
Identical group No.300722 (1 seq.)
>SRA1031695
SRR035087.473348
454 Sequencing (SRP001808)
155
79
-
Arg
CCT
[SRA]
Identical group No.300782 (1 seq.)
>SRA1032143
SRR035087.562481
454 Sequencing (SRP001808)
119
46
-
Arg
CCT
[SRA]
Identical group No.484041 (1 seq.)
>SRA1028810
SRR035087.13020
454 Sequencing (SRP001808)
358
285
-
Arg
CCT
[SRA]
Identical group No.484147 (1 seq.)
>SRA1029482
SRR035087.134945
454 Sequencing (SRP001808)
283
358
+
Arg
CCT
[SRA]
Identical group No.484363 (1 seq.)
>SRA1030847
SRR035087.338259
454 Sequencing (SRP001808)
247
174
-
Arg
CCT
[SRA]
Identical group No.484376 (1 seq.)
>SRA1030930
SRR035087.350517
454 Sequencing (SRP001808)
128
203
+
Arg
CCT
[SRA]
Identical group No.484381 (1 seq.)
>SRA1030956
SRR035087.354154
454 Sequencing (SRP001808)
321
248
-
Arg
CCT
[SRA]
Identical group No.484387 (1 seq.)
>SRA1030990
SRR035087.357557
454 Sequencing (SRP001808)
377
302
-
Arg
CCT
[SRA]
Identical group No.672268 (2 seq.)
>SRA1029038
SRR035087.63806
454 Sequencing (SRP001808)
312
386
+
Arg
CCT
[SRA]
>SRA1029652
SRR035087.157535
454 Sequencing (SRP001808)
311
385
+
Arg
CCT
[SRA]
Identical group No.672422 (2 seq.)
>SRA1030220
SRR035087.244404
454 Sequencing (SRP001808)
75
149
+
Arg
CCT
[SRA]
>SRA1031693
SRR035087.472793
454 Sequencing (SRP001808)
74
147
+
Arg
CCT
[SRA]
Identical group No.672519 (1 seq.)
>SRA1031081
SRR035087.369916
454 Sequencing (SRP001808)
391
317
-
Arg
CCT
[SRA]
Identical group No.672529 (1 seq.)
>SRA1031173
SRR035087.385346
454 Sequencing (SRP001808)
404
333
-
Arg
CCT
[SRA]
Identical group No.672604 (1 seq.)
>SRA1031833
SRR035087.496442
454 Sequencing (SRP001808)
286
211
-
Arg
CCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK