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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = CGG
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235646 (1 seq.)
>SRA1029450
SRR035087.128890
454 Sequencing (SRP001808)
52
130
+
Pro
CGG
[SRA]
Identical group No.244478 (1 seq.)
>SRA1030124
SRR035087.230490
454 Sequencing (SRP001808)
183
106
-
Pro
CGG
[SRA]
Identical group No.244522 (1 seq.)
>SRA1031375
SRR035087.420836
454 Sequencing (SRP001808)
314
391
+
Pro
CGG
[SRA]
Identical group No.244539 (1 seq.)
>SRA1031756
SRR035087.482513
454 Sequencing (SRP001808)
273
196
-
Pro
CGG
[SRA]
Identical group No.244557 (1 seq.)
>SRA1032267
SRR035087.591752
454 Sequencing (SRP001808)
417
340
-
Pro
CGG
[SRA]
Identical group No.300390 (1 seq.)
>SRA1029721
SRR035087.170010
454 Sequencing (SRP001808)
339
265
-
Pro
CGG
[SRA]
Identical group No.300414 (2 seq.)
>SRA1029851
SRR035087.191802
454 Sequencing (SRP001808)
271
194
-
Pro
CGG
[SRA]
>SRA1030344
SRR035087.265719
454 Sequencing (SRP001808)
271
194
-
Pro
CGG
[SRA]
Identical group No.300416 (1 seq.)
>SRA1029855
SRR035087.192639
454 Sequencing (SRP001808)
79
3
-
Pro
CGG
[SRA]
Identical group No.300539 (1 seq.)
>SRA1030560
SRR035087.295792
454 Sequencing (SRP001808)
477
403
-
Pro
CGG
[SRA]
Identical group No.300603 (1 seq.)
>SRA1030989
SRR035087.357503
454 Sequencing (SRP001808)
39
115
+
Pro
CGG
[SRA]
Identical group No.300650 (1 seq.)
>SRA1031275
SRR035087.405662
454 Sequencing (SRP001808)
429
355
-
Pro
CGG
[SRA]
Identical group No.672636 (1 seq.)
>SRA1032169
SRR035087.567748
454 Sequencing (SRP001808)
54
128
+
Pro
CGG
[SRA]
Identical group No.788032 (1 seq.)
>SRA1029231
SRR035087.94719
454 Sequencing (SRP001808)
224
297
+
Pro
CGG
[SRA]
Identical group No.788340 (1 seq.)
>SRA1032319
SRR035087.603531
454 Sequencing (SRP001808)
164
237
+
Pro
CGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK