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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = CGT
HIT:
25 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300684 (1 seq.)
>SRA1031471
SRR035087.435678
454 Sequencing (SRP001808)
254
327
+
Thr
CGT
[SRA]
Identical group No.300690 (1 seq.)
>SRA1031495
SRR035087.438762
454 Sequencing (SRP001808)
400
324
-
Thr
CGT
[SRA]
Identical group No.300999 (1 seq.)
>SRA1029108
SRR035087.75200
454 Sequencing (SRP001808)
309
382
+
Thr
CGT
[SRA]
Identical group No.484144 (1 seq.)
>SRA1029439
SRR035087.127051
454 Sequencing (SRP001808)
345
270
-
Thr
CGT
[SRA]
Identical group No.484169 (1 seq.)
>SRA1029567
SRR035087.147067
454 Sequencing (SRP001808)
227
152
-
Thr
CGT
[SRA]
Identical group No.484189 (1 seq.)
>SRA1029723
SRR035087.170672
454 Sequencing (SRP001808)
241
316
+
Thr
CGT
[SRA]
Identical group No.484327 (1 seq.)
>SRA1030613
SRR035087.304441
454 Sequencing (SRP001808)
147
222
+
Thr
CGT
[SRA]
Identical group No.484336 (1 seq.)
>SRA1030665
SRR035087.311347
454 Sequencing (SRP001808)
216
141
-
Thr
CGT
[SRA]
Identical group No.484398 (1 seq.)
>SRA1031103
SRR035087.373329
454 Sequencing (SRP001808)
247
172
-
Thr
CGT
[SRA]
Identical group No.484403 (1 seq.)
>SRA1031172
SRR035087.385340
454 Sequencing (SRP001808)
120
192
+
Thr
CGT
[SRA]
Identical group No.484432 (1 seq.)
>SRA1031428
SRR035087.427818
454 Sequencing (SRP001808)
230
155
-
Thr
CGT
[SRA]
Identical group No.484465 (1 seq.)
>SRA1031614
SRR035087.460386
454 Sequencing (SRP001808)
219
147
-
Thr
CGT
[SRA]
Identical group No.484500 (1 seq.)
>SRA1031848
SRR035087.498784
454 Sequencing (SRP001808)
219
146
-
Thr
CGT
[SRA]
Identical group No.484506 (1 seq.)
>SRA1031904
SRR035087.509777
454 Sequencing (SRP001808)
273
201
-
Thr
CGT
[SRA]
Identical group No.484521 (1 seq.)
>SRA1032000
SRR035087.528726
454 Sequencing (SRP001808)
217
142
-
Thr
CGT
[SRA]
Identical group No.484555 (1 seq.)
>SRA1032268
SRR035087.591752
454 Sequencing (SRP001808)
328
253
-
Thr
CGT
[SRA]
Identical group No.672279 (1 seq.)
>SRA1029079
SRR035087.69640
454 Sequencing (SRP001808)
184
258
+
Thr
CGT
[SRA]
Identical group No.672310 (1 seq.)
>SRA1029323
SRR035087.108642
454 Sequencing (SRP001808)
360
431
+
Thr
CGT
[SRA]
Identical group No.672314 (1 seq.)
>SRA1029366
SRR035087.116962
454 Sequencing (SRP001808)
440
368
-
Thr
CGT
[SRA]
Identical group No.672338 (1 seq.)
>SRA1029583
SRR035087.148953
454 Sequencing (SRP001808)
119
45
-
Thr
CGT
[SRA]
Identical group No.672404 (1 seq.)
>SRA1030111
SRR035087.228796
454 Sequencing (SRP001808)
278
204
-
Thr
CGT
[SRA]
Identical group No.672507 (1 seq.)
>SRA1031013
SRR035087.360384
454 Sequencing (SRP001808)
46
117
+
Thr
CGT
[SRA]
Identical group No.788164 (1 seq.)
>SRA1031243
SRR035087.397941
454 Sequencing (SRP001808)
222
149
-
Thr
CGT
[SRA]
Identical group No.788184 (1 seq.)
>SRA1031594
SRR035087.456452
454 Sequencing (SRP001808)
470
397
-
Thr
CGT
[SRA]
Identical group No.788240 (1 seq.)
>SRA1032399
SRR035087.621984
454 Sequencing (SRP001808)
223
150
-
Thr
CGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK