This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = CTC
HIT:
36 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244441 (1 seq.)
>SRA1029192
SRR035087.89864
454 Sequencing (SRP001808)
251
326
+
Glu
CTC
[SRA]
Identical group No.244450 (1 seq.)
>SRA1029397
SRR035087.121119
454 Sequencing (SRP001808)
117
191
+
Glu
CTC
[SRA]
Identical group No.244455 (1 seq.)
>SRA1029495
SRR035087.136651
454 Sequencing (SRP001808)
239
163
-
Glu
CTC
[SRA]
Identical group No.244550 (1 seq.)
>SRA1031916
SRR035087.511519
454 Sequencing (SRP001808)
332
409
+
Glu
CTC
[SRA]
Identical group No.300388 (1 seq.)
>SRA1029708
SRR035087.168262
454 Sequencing (SRP001808)
79
3
-
Glu
CTC
[SRA]
Identical group No.300739 (1 seq.)
>SRA1031806
SRR035087.492163
454 Sequencing (SRP001808)
161
237
+
Glu
CTC
[SRA]
Identical group No.300795 (1 seq.)
>SRA1032227
SRR035087.581285
454 Sequencing (SRP001808)
295
219
-
Glu
CTC
[SRA]
Identical group No.484046 (1 seq.)
>SRA1028863
SRR035087.25371
454 Sequencing (SRP001808)
270
195
-
Glu
CTC
[SRA]
Identical group No.484109 (1 seq.)
>SRA1029195
SRR035087.90329
454 Sequencing (SRP001808)
85
10
-
Glu
CTC
[SRA]
Identical group No.484185 (1 seq.)
>SRA1029682
SRR035087.162961
454 Sequencing (SRP001808)
400
325
-
Glu
CTC
[SRA]
Identical group No.484295 (1 seq.)
>SRA1030415
SRR035087.277052
454 Sequencing (SRP001808)
219
293
+
Glu
CTC
[SRA]
Identical group No.484389 (1 seq.)
>SRA1031006
SRR035087.359522
454 Sequencing (SRP001808)
321
246
-
Glu
CTC
[SRA]
Identical group No.484410 (1 seq.)
>SRA1031208
SRR035087.391273
454 Sequencing (SRP001808)
305
379
+
Glu
CTC
[SRA]
Identical group No.484424 (1 seq.)
>SRA1031333
SRR035087.413936
454 Sequencing (SRP001808)
156
231
+
Glu
CTC
[SRA]
Identical group No.484455 (1 seq.)
>SRA1031552
SRR035087.448809
454 Sequencing (SRP001808)
8
81
+
Glu
CTC
[SRA]
Identical group No.484478 (1 seq.)
>SRA1031703
SRR035087.474171
454 Sequencing (SRP001808)
184
259
+
Glu
CTC
[SRA]
Identical group No.484492 (1 seq.)
>SRA1031792
SRR035087.488367
454 Sequencing (SRP001808)
135
60
-
Glu
CTC
[SRA]
Identical group No.484557 (1 seq.)
>SRA1032274
SRR035087.592805
454 Sequencing (SRP001808)
398
323
-
Glu
CTC
[SRA]
Identical group No.672269 (1 seq.)
>SRA1029041
SRR035087.64222
454 Sequencing (SRP001808)
112
38
-
Glu
CTC
[SRA]
Identical group No.672286 (1 seq.)
>SRA1029142
SRR035087.81150
454 Sequencing (SRP001808)
281
207
-
Glu
CTC
[SRA]
Identical group No.672307 (1 seq.)
>SRA1029301
SRR035087.105534
454 Sequencing (SRP001808)
106
35
-
Glu
CTC
[SRA]
Identical group No.672341 (1 seq.)
>SRA1029604
SRR035087.150441
454 Sequencing (SRP001808)
88
161
+
Glu
CTC
[SRA]
Identical group No.672384 (1 seq.)
>SRA1029974
SRR035087.210498
454 Sequencing (SRP001808)
65
137
+
Glu
CTC
[SRA]
Identical group No.672429 (1 seq.)
>SRA1030290
SRR035087.256725
454 Sequencing (SRP001808)
336
264
-
Glu
CTC
[SRA]
Identical group No.672441 (1 seq.)
>SRA1030383
SRR035087.272600
454 Sequencing (SRP001808)
330
402
+
Glu
CTC
[SRA]
Identical group No.672481 (1 seq.)
>SRA1030781
SRR035087.331242
454 Sequencing (SRP001808)
410
336
-
Glu
CTC
[SRA]
Identical group No.672540 (1 seq.)
>SRA1031221
SRR035087.394071
454 Sequencing (SRP001808)
84
10
-
Glu
CTC
[SRA]
Identical group No.672562 (1 seq.)
>SRA1031426
SRR035087.427709
454 Sequencing (SRP001808)
290
216
-
Glu
CTC
[SRA]
Identical group No.672567 (1 seq.)
>SRA1031447
SRR035087.431589
454 Sequencing (SRP001808)
308
234
-
Glu
CTC
[SRA]
Identical group No.672638 (1 seq.)
>SRA1032180
SRR035087.570434
454 Sequencing (SRP001808)
184
258
+
Glu
CTC
[SRA]
Identical group No.672644 (1 seq.)
>SRA1032212
SRR035087.577524
454 Sequencing (SRP001808)
390
316
-
Glu
CTC
[SRA]
Identical group No.788118 (1 seq.)
>SRA1030517
SRR035087.290115
454 Sequencing (SRP001808)
212
283
+
Glu
CTC
[SRA]
Identical group No.788157 (1 seq.)
>SRA1031158
SRR035087.381800
454 Sequencing (SRP001808)
71
142
+
Glu
CTC
[SRA]
Identical group No.788188 (1 seq.)
>SRA1031645
SRR035087.463883
454 Sequencing (SRP001808)
326
399
+
Glu
CTC
[SRA]
Identical group No.788214 (1 seq.)
>SRA1032055
SRR035087.541118
454 Sequencing (SRP001808)
97
27
-
Glu
CTC
[SRA]
Identical group No.788332 (1 seq.)
>SRA1030628
SRR035087.306377
454 Sequencing (SRP001808)
415
488
+
Glu
CTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK