This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = CTT
HIT:
28 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74744 (1 seq.)
>SRA1031060
SRR035087.365878
454 Sequencing (SRP001808)
116
27
-
Lys
CTT
[SRA]
Identical group No.186079 (2 seq.)
>SRA1030101
SRR035087.227610
454 Sequencing (SRP001808)
178
262
+
Lys
CTT
[SRA]
>SRA1030205
SRR035087.242078
454 Sequencing (SRP001808)
178
262
+
Lys
CTT
[SRA]
Identical group No.244471 (1 seq.)
>SRA1029991
SRR035087.213069
454 Sequencing (SRP001808)
186
110
-
Lys
CTT
[SRA]
Identical group No.300282 (1 seq.)
>SRA1028840
SRR035087.19045
454 Sequencing (SRP001808)
448
372
-
Lys
CTT
[SRA]
Identical group No.300487 (1 seq.)
>SRA1030299
SRR035087.259017
454 Sequencing (SRP001808)
409
485
+
Lys
CTT
[SRA]
Identical group No.300570 (1 seq.)
>SRA1030779
SRR035087.331157
454 Sequencing (SRP001808)
93
169
+
Lys
CTT
[SRA]
Identical group No.300613 (1 seq.)
>SRA1031076
SRR035087.368797
454 Sequencing (SRP001808)
93
169
+
Lys
CTT
[SRA]
Identical group No.300746 (1 seq.)
>SRA1031903
SRR035087.509259
454 Sequencing (SRP001808)
388
312
-
Lys
CTT
[SRA]
Identical group No.300754 (1 seq.)
>SRA1031955
SRR035087.519964
454 Sequencing (SRP001808)
246
322
+
Lys
CTT
[SRA]
Identical group No.484057 (2 seq.)
>SRA1028897
SRR035087.33738
454 Sequencing (SRP001808)
34
109
+
Lys
CTT
[SRA]
>SRA1031225
SRR035087.395781
454 Sequencing (SRP001808)
36
111
+
Lys
CTT
[SRA]
Identical group No.484067 (1 seq.)
>SRA1028950
SRR035087.44633
454 Sequencing (SRP001808)
84
159
+
Lys
CTT
[SRA]
Identical group No.484162 (1 seq.)
>SRA1029543
SRR035087.143538
454 Sequencing (SRP001808)
99
24
-
Lys
CTT
[SRA]
Identical group No.484308 (1 seq.)
>SRA1030506
SRR035087.288757
454 Sequencing (SRP001808)
78
153
+
Lys
CTT
[SRA]
Identical group No.484421 (1 seq.)
>SRA1031297
SRR035087.407117
454 Sequencing (SRP001808)
209
134
-
Lys
CTT
[SRA]
Identical group No.484461 (1 seq.)
>SRA1031591
SRR035087.456026
454 Sequencing (SRP001808)
193
268
+
Lys
CTT
[SRA]
Identical group No.484472 (1 seq.)
>SRA1031646
SRR035087.463937
454 Sequencing (SRP001808)
140
215
+
Lys
CTT
[SRA]
Identical group No.484482 (1 seq.)
>SRA1031744
SRR035087.479823
454 Sequencing (SRP001808)
109
36
-
Lys
CTT
[SRA]
Identical group No.484493 (1 seq.)
>SRA1031796
SRR035087.490771
454 Sequencing (SRP001808)
60
135
+
Lys
CTT
[SRA]
Identical group No.484546 (1 seq.)
>SRA1032172
SRR035087.568051
454 Sequencing (SRP001808)
155
82
-
Lys
CTT
[SRA]
Identical group No.672274 (1 seq.)
>SRA1029062
SRR035087.67994
454 Sequencing (SRP001808)
45
119
+
Lys
CTT
[SRA]
Identical group No.672328 (1 seq.)
>SRA1029487
SRR035087.135115
454 Sequencing (SRP001808)
101
175
+
Lys
CTT
[SRA]
Identical group No.672333 (1 seq.)
>SRA1029534
SRR035087.142935
454 Sequencing (SRP001808)
114
40
-
Lys
CTT
[SRA]
Identical group No.672395 (1 seq.)
>SRA1030045
SRR035087.220648
454 Sequencing (SRP001808)
384
458
+
Lys
CTT
[SRA]
Identical group No.672576 (1 seq.)
>SRA1031563
SRR035087.450567
454 Sequencing (SRP001808)
10
84
+
Lys
CTT
[SRA]
Identical group No.672578 (1 seq.)
>SRA1031581
SRR035087.453695
454 Sequencing (SRP001808)
241
315
+
Lys
CTT
[SRA]
Identical group No.788048 (1 seq.)
>SRA1029446
SRR035087.128613
454 Sequencing (SRP001808)
381
308
-
Lys
CTT
[SRA]
Identical group No.788092 (1 seq.)
>SRA1030119
SRR035087.229978
454 Sequencing (SRP001808)
214
141
-
Lys
CTT
[SRA]
Identical group No.788096 (1 seq.)
>SRA1030191
SRR035087.240160
454 Sequencing (SRP001808)
447
377
-
Lys
CTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK