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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GAG
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49621 (4 seq.)
>WENV170622272
FUWD013095498
[FUWD] metagenome; unknown
1719
1808
+
Leu
GAG
[ENA]
¢þ
>WENV170630492
FUWD013310205
[FUWD] metagenome; unknown
1719
1808
+
Leu
GAG
[ENA]
¢þ
>SRA1032290
SRR035087.596828
454 Sequencing (SRP001808)
229
318
+
Leu
GAG
[SRA]
>SRA1044919
SRR035092.373077
454 Sequencing (SRP001813)
70
159
+
Leu
GAG
[SRA]
Identical group No.74732 (2 seq.)
>WENV170720135
LSQX01142177
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3141
3227
+
Leu
GAG
[ENA]
¢þ
>SRA1029866
SRR035087.194391
454 Sequencing (SRP001808)
335
421
+
Leu
GAG
[SRA]
Identical group No.74733 (3 seq.)
>WENV170623041
FUWD013134112
[FUWD] metagenome; unknown
1892
1804
-
Leu
GAG
[ENA]
¢þ
>WENV170631275
FUWD013347144
[FUWD] metagenome; unknown
1892
1804
-
Leu
GAG
[ENA]
¢þ
>SRA1030066
SRR035087.223473
454 Sequencing (SRP001808)
4
92
+
Leu
GAG
[SRA]
Identical group No.87096 (10 seq.)
>WENV170624864
FUWD013188183
[FUWD] metagenome; unknown
548
635
+
Leu
GAG
[ENA]
¢þ
>WENV170633130
FUWD013391978
[FUWD] metagenome; unknown
548
635
+
Leu
GAG
[ENA]
¢þ
>SRA1030081
SRR035087.224642
454 Sequencing (SRP001808)
131
218
+
Leu
GAG
[SRA]
>SRA1030887
SRR035087.343177
454 Sequencing (SRP001808)
111
24
-
Leu
GAG
[SRA]
>SRA1033407
SRR035088.248512
454 Sequencing (SRP001809)
125
212
+
Leu
GAG
[SRA]
>SRA1036249
SRR035089.480215
454 Sequencing (SRP001810)
297
384
+
Leu
GAG
[SRA]
>SRA1038331
SRR035090.289082
454 Sequencing (SRP001811)
335
422
+
Leu
GAG
[SRA]
>SRA1049361
SRR035095.63976
454 Sequencing (SRP001816)
305
218
-
Leu
GAG
[SRA]
>SRA1049771
SRR035095.136865
454 Sequencing (SRP001816)
306
219
-
Leu
GAG
[SRA]
>SRA1050109
SRR035095.194417
454 Sequencing (SRP001816)
281
368
+
Leu
GAG
[SRA]
Identical group No.112562 (8 seq.)
>WENV170627197
FUWD013231994
[FUWD] metagenome; unknown
14871
14785
-
Leu
GAG
[ENA]
¢þ
>WENV170632582
FUWD013384729
[FUWD] metagenome; unknown
14871
14785
-
Leu
GAG
[ENA]
¢þ
>SRA1029475
SRR035087.133174
454 Sequencing (SRP001808)
17
103
+
Leu
GAG
[SRA]
>SRA1031995
SRR035087.528302
454 Sequencing (SRP001808)
148
234
+
Leu
GAG
[SRA]
>SRA1034435
SRR035089.94062
454 Sequencing (SRP001810)
428
342
-
Leu
GAG
[SRA]
>SRA1034834
SRR035089.182807
454 Sequencing (SRP001810)
391
477
+
Leu
GAG
[SRA]
>SRA1048199
SRR035094.127835
454 Sequencing (SRP001815)
92
178
+
Leu
GAG
[SRA]
>SRA1048694
SRR035094.229126
454 Sequencing (SRP001815)
165
79
-
Leu
GAG
[SRA]
Identical group No.112591 (6 seq.)
>WENV170603294
FUWD010299293
[FUWD] metagenome; unknown
474
388
-
Leu
GAG
[ENA]
¢þ
>WENV170605016
FUWD010441483
[FUWD] metagenome; unknown
561
475
-
Leu
GAG
[ENA]
¢þ
>SRA1029122
SRR035087.78137
454 Sequencing (SRP001808)
209
295
+
Leu
GAG
[SRA]
>SRA1033784
SRR035088.353947
454 Sequencing (SRP001809)
78
164
+
Leu
GAG
[SRA]
>SRA1035018
SRR035089.219903
454 Sequencing (SRP001810)
109
195
+
Leu
GAG
[SRA]
>SRA1049890
SRR035095.154948
454 Sequencing (SRP001816)
280
366
+
Leu
GAG
[SRA]
Identical group No.112634 (4 seq.)
>WENV170613467
FUWD012806962
[FUWD] metagenome; unknown
645
731
+
Leu
GAG
[ENA]
¢þ
>SRA1032222
SRR035087.580608
454 Sequencing (SRP001808)
117
31
-
Leu
GAG
[SRA]
>SRA1036258
SRR035089.481904
454 Sequencing (SRP001810)
53
139
+
Leu
GAG
[SRA]
>SRA1043157
SRR035092.60359
454 Sequencing (SRP001813)
183
269
+
Leu
GAG
[SRA]
Identical group No.118318 (5 seq.)
>WENV170622515
FUWD013107528
[FUWD] metagenome; unknown
447
361
-
Leu
GAG
[ENA]
¢þ
>WENV170630740
FUWD013321846
[FUWD] metagenome; unknown
447
361
-
Leu
GAG
[ENA]
¢þ
>SRA1029932
SRR035087.204561
454 Sequencing (SRP001808)
183
97
-
Leu
GAG
[SRA]
>SRA1033801
SRR035088.359371
454 Sequencing (SRP001809)
246
160
-
Leu
GAG
[SRA]
>SRA1042160
SRR035091.348270
454 Sequencing (SRP001812)
214
128
-
Leu
GAG
[SRA]
Identical group No.118374 (3 seq.)
>WENV170607705
FUWD010850498
[FUWD] metagenome; unknown
254
171
-
Leu
GAG
[ENA]
¢þ
>SRA1031836
SRR035087.496928
454 Sequencing (SRP001808)
314
397
+
Leu
GAG
[SRA]
>SRA1032282
SRR035087.594770
454 Sequencing (SRP001808)
232
315
+
Leu
GAG
[SRA]
Identical group No.118379 (5 seq.)
>WENV170605125
FUWD010451742
[FUWD] metagenome; unknown
181
267
+
Leu
GAG
[ENA]
¢þ
>SRA1031935
SRR035087.515567
454 Sequencing (SRP001808)
164
78
-
Leu
GAG
[SRA]
>SRA1033321
SRR035088.223543
454 Sequencing (SRP001809)
234
148
-
Leu
GAG
[SRA]
>SRA1048997
SRR035094.307632
454 Sequencing (SRP001815)
132
46
-
Leu
GAG
[SRA]
>SRA1049993
SRR035095.173437
454 Sequencing (SRP001816)
57
143
+
Leu
GAG
[SRA]
Identical group No.153925 (7 seq.)
>WENV170611587
FUWD012353642
[FUWD] metagenome; unknown
251
166
-
Leu
GAG
[ENA]
¢þ
>WENV170622492
FUWD013107170
[FUWD] metagenome; unknown
1386
1301
-
Leu
GAG
[ENA]
¢þ
>WENV170630716
FUWD013321506
[FUWD] metagenome; unknown
1386
1301
-
Leu
GAG
[ENA]
¢þ
>SRA1018198
SRR035082.254790
454 Sequencing (SRP001803)
253
168
-
Leu
GAG
[SRA]
>SRA1018504
SRR035082.301736
454 Sequencing (SRP001803)
498
413
-
Leu
GAG
[SRA]
>SRA1025545
SRR035085.36764
454 Sequencing (SRP001806)
92
177
+
Leu
GAG
[SRA]
>SRA1030274
SRR035087.254729
454 Sequencing (SRP001808)
137
52
-
Leu
GAG
[SRA]
Identical group No.157477 (3 seq.)
>WENV170612498
FUWD012623554
[FUWD] metagenome; unknown
21
103
+
Leu
GAG
[ENA]
¢þ
>SRA1017152
SRR035082.89875
454 Sequencing (SRP001803)
305
387
+
Leu
GAG
[SRA]
>SRA1028832
SRR035087.16504
454 Sequencing (SRP001808)
9
91
+
Leu
GAG
[SRA]
Identical group No.219628 (3 seq.)
>WENV170611969
FUWD012471615
[FUWD] metagenome; unknown
82
1
-
Leu
GAG
[ENA]
¢þ
>SRA1029238
SRR035087.96338
454 Sequencing (SRP001808)
82
1
-
Leu
GAG
[SRA]
>SRA1031683
SRR035087.471071
454 Sequencing (SRP001808)
82
1
-
Leu
GAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK