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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GTT
HIT:
68 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49645 (1 seq.)
>SRA1030804
SRR035087.333293
454 Sequencing (SRP001808)
166
253
+
Asn
GTT
[SRA]
Identical group No.90546 (1 seq.)
>SRA1029643
SRR035087.155917
454 Sequencing (SRP001808)
245
332
+
Asn
GTT
[SRA]
Identical group No.186081 (1 seq.)
>SRA1030211
SRR035087.243587
454 Sequencing (SRP001808)
181
265
+
Asn
GTT
[SRA]
Identical group No.186086 (1 seq.)
>SRA1030411
SRR035087.276188
454 Sequencing (SRP001808)
98
14
-
Asn
GTT
[SRA]
Identical group No.219663 (1 seq.)
>SRA1030492
SRR035087.287135
454 Sequencing (SRP001808)
406
489
+
Asn
GTT
[SRA]
Identical group No.235650 (1 seq.)
>SRA1029962
SRR035087.208972
454 Sequencing (SRP001808)
352
428
+
Asn
GTT
[SRA]
Identical group No.244462 (1 seq.)
>SRA1029573
SRR035087.147831
454 Sequencing (SRP001808)
178
254
+
Asn
GTT
[SRA]
Identical group No.244516 (1 seq.)
>SRA1031146
SRR035087.379908
454 Sequencing (SRP001808)
251
327
+
Asn
GTT
[SRA]
Identical group No.300286 (1 seq.)
>SRA1028890
SRR035087.32017
454 Sequencing (SRP001808)
191
267
+
Asn
GTT
[SRA]
Identical group No.300401 (1 seq.)
>SRA1029771
SRR035087.178457
454 Sequencing (SRP001808)
377
450
+
Asn
GTT
[SRA]
Identical group No.300403 (1 seq.)
>SRA1029780
SRR035087.180318
454 Sequencing (SRP001808)
343
267
-
Asn
GTT
[SRA]
Identical group No.300454 (1 seq.)
>SRA1030103
SRR035087.227735
454 Sequencing (SRP001808)
399
325
-
Asn
GTT
[SRA]
Identical group No.300468 (1 seq.)
>SRA1030194
SRR035087.240160
454 Sequencing (SRP001808)
199
125
-
Asn
GTT
[SRA]
Identical group No.300515 (1 seq.)
>SRA1030418
SRR035087.277379
454 Sequencing (SRP001808)
258
182
-
Asn
GTT
[SRA]
Identical group No.300566 (1 seq.)
>SRA1030759
SRR035087.327598
454 Sequencing (SRP001808)
193
117
-
Asn
GTT
[SRA]
Identical group No.300606 (1 seq.)
>SRA1031032
SRR035087.362645
454 Sequencing (SRP001808)
354
279
-
Asn
GTT
[SRA]
Identical group No.300655 (1 seq.)
>SRA1031303
SRR035087.409490
454 Sequencing (SRP001808)
94
19
-
Asn
GTT
[SRA]
Identical group No.300706 (1 seq.)
>SRA1031584
SRR035087.454659
454 Sequencing (SRP001808)
513
437
-
Asn
GTT
[SRA]
Identical group No.300798 (1 seq.)
>SRA1032235
SRR035087.583674
454 Sequencing (SRP001808)
209
133
-
Asn
GTT
[SRA]
Identical group No.484069 (1 seq.)
>SRA1028957
SRR035087.46236
454 Sequencing (SRP001808)
88
13
-
Asn
GTT
[SRA]
Identical group No.484076 (1 seq.)
>SRA1029012
SRR035087.58124
454 Sequencing (SRP001808)
262
187
-
Asn
GTT
[SRA]
Identical group No.484105 (1 seq.)
>SRA1029174
SRR035087.87392
454 Sequencing (SRP001808)
79
153
+
Asn
GTT
[SRA]
Identical group No.484134 (1 seq.)
>SRA1029371
SRR035087.118215
454 Sequencing (SRP001808)
389
314
-
Asn
GTT
[SRA]
Identical group No.484172 (1 seq.)
>SRA1029585
SRR035087.149145
454 Sequencing (SRP001808)
77
2
-
Asn
GTT
[SRA]
Identical group No.484192 (1 seq.)
>SRA1029728
SRR035087.171528
454 Sequencing (SRP001808)
133
207
+
Asn
GTT
[SRA]
Identical group No.484224 (1 seq.)
>SRA1029912
SRR035087.200182
454 Sequencing (SRP001808)
164
89
-
Asn
GTT
[SRA]
Identical group No.484227 (1 seq.)
>SRA1029935
SRR035087.204719
454 Sequencing (SRP001808)
205
277
+
Asn
GTT
[SRA]
Identical group No.484237 (1 seq.)
>SRA1030012
SRR035087.216048
454 Sequencing (SRP001808)
178
105
-
Asn
GTT
[SRA]
Identical group No.484263 (1 seq.)
>SRA1030163
SRR035087.235930
454 Sequencing (SRP001808)
161
236
+
Asn
GTT
[SRA]
Identical group No.484272 (1 seq.)
>SRA1030242
SRR035087.248539
454 Sequencing (SRP001808)
268
343
+
Asn
GTT
[SRA]
Identical group No.484285 (1 seq.)
>SRA1030337
SRR035087.265046
454 Sequencing (SRP001808)
114
186
+
Asn
GTT
[SRA]
Identical group No.484289 (1 seq.)
>SRA1030379
SRR035087.271523
454 Sequencing (SRP001808)
386
311
-
Asn
GTT
[SRA]
Identical group No.484293 (1 seq.)
>SRA1030410
SRR035087.276188
454 Sequencing (SRP001808)
175
100
-
Asn
GTT
[SRA]
Identical group No.484329 (1 seq.)
>SRA1030623
SRR035087.306191
454 Sequencing (SRP001808)
166
92
-
Asn
GTT
[SRA]
Identical group No.484338 (1 seq.)
>SRA1030686
SRR035087.314410
454 Sequencing (SRP001808)
172
244
+
Asn
GTT
[SRA]
Identical group No.484347 (1 seq.)
>SRA1030772
SRR035087.329967
454 Sequencing (SRP001808)
321
393
+
Asn
GTT
[SRA]
Identical group No.484352 (1 seq.)
>SRA1030805
SRR035087.333293
454 Sequencing (SRP001808)
369
442
+
Asn
GTT
[SRA]
Identical group No.484374 (2 seq.)
>SRA1030902
SRR035087.344157
454 Sequencing (SRP001808)
230
154
-
Asn
GTT
[SRA]
>SRA1031604
SRR035087.458889
454 Sequencing (SRP001808)
230
154
-
Asn
GTT
[SRA]
Identical group No.484412 (1 seq.)
>SRA1031228
SRR035087.395801
454 Sequencing (SRP001808)
255
330
+
Asn
GTT
[SRA]
Identical group No.484431 (1 seq.)
>SRA1031409
SRR035087.425690
454 Sequencing (SRP001808)
103
30
-
Asn
GTT
[SRA]
Identical group No.484466 (1 seq.)
>SRA1031616
SRR035087.460991
454 Sequencing (SRP001808)
166
91
-
Asn
GTT
[SRA]
Identical group No.484510 (1 seq.)
>SRA1031930
SRR035087.514514
454 Sequencing (SRP001808)
230
306
+
Asn
GTT
[SRA]
Identical group No.484530 (1 seq.)
>SRA1032044
SRR035087.539963
454 Sequencing (SRP001808)
156
231
+
Asn
GTT
[SRA]
Identical group No.484533 (1 seq.)
>SRA1032077
SRR035087.546912
454 Sequencing (SRP001808)
470
398
-
Asn
GTT
[SRA]
Identical group No.484568 (1 seq.)
>SRA1032390
SRR035087.620148
454 Sequencing (SRP001808)
370
296
-
Asn
GTT
[SRA]
Identical group No.672244 (1 seq.)
>SRA1028847
SRR035087.20124
454 Sequencing (SRP001808)
373
299
-
Asn
GTT
[SRA]
Identical group No.672297 (1 seq.)
>SRA1029217
SRR035087.93749
454 Sequencing (SRP001808)
272
198
-
Asn
GTT
[SRA]
Identical group No.672304 (1 seq.)
>SRA1029276
SRR035087.101732
454 Sequencing (SRP001808)
277
351
+
Asn
GTT
[SRA]
Identical group No.672320 (1 seq.)
>SRA1029441
SRR035087.127631
454 Sequencing (SRP001808)
326
254
-
Asn
GTT
[SRA]
Identical group No.672342 (1 seq.)
>SRA1029605
SRR035087.150492
454 Sequencing (SRP001808)
343
269
-
Asn
GTT
[SRA]
Identical group No.672362 (1 seq.)
>SRA1029759
SRR035087.177221
454 Sequencing (SRP001808)
382
308
-
Asn
GTT
[SRA]
Identical group No.672368 (1 seq.)
>SRA1029826
SRR035087.188582
454 Sequencing (SRP001808)
2
76
+
Asn
GTT
[SRA]
Identical group No.672380 (1 seq.)
>SRA1029934
SRR035087.204674
454 Sequencing (SRP001808)
332
261
-
Asn
GTT
[SRA]
Identical group No.672398 (1 seq.)
>SRA1030062
SRR035087.222154
454 Sequencing (SRP001808)
286
360
+
Asn
GTT
[SRA]
Identical group No.672406 (1 seq.)
>SRA1030117
SRR035087.229929
454 Sequencing (SRP001808)
313
239
-
Asn
GTT
[SRA]
Identical group No.672432 (1 seq.)
>SRA1030304
SRR035087.259602
454 Sequencing (SRP001808)
345
274
-
Asn
GTT
[SRA]
Identical group No.672511 (1 seq.)
>SRA1031030
SRR035087.362446
454 Sequencing (SRP001808)
327
253
-
Asn
GTT
[SRA]
Identical group No.672522 (1 seq.)
>SRA1031106
SRR035087.374560
454 Sequencing (SRP001808)
502
430
-
Asn
GTT
[SRA]
Identical group No.672526 (2 seq.)
>SRA1031121
SRR035087.377025
454 Sequencing (SRP001808)
36
110
+
Asn
GTT
[SRA]
>SRA1031256
SRR035087.401175
454 Sequencing (SRP001808)
36
110
+
Asn
GTT
[SRA]
Identical group No.672598 (1 seq.)
>SRA1031747
SRR035087.481191
454 Sequencing (SRP001808)
323
395
+
Asn
GTT
[SRA]
Identical group No.672603 (1 seq.)
>SRA1031821
SRR035087.494929
454 Sequencing (SRP001808)
132
206
+
Asn
GTT
[SRA]
Identical group No.672623 (1 seq.)
>SRA1031982
SRR035087.524764
454 Sequencing (SRP001808)
205
133
-
Asn
GTT
[SRA]
Identical group No.672641 (1 seq.)
>SRA1032197
SRR035087.574225
454 Sequencing (SRP001808)
305
377
+
Asn
GTT
[SRA]
Identical group No.672642 (1 seq.)
>SRA1032201
SRR035087.574471
454 Sequencing (SRP001808)
338
409
+
Asn
GTT
[SRA]
Identical group No.672647 (1 seq.)
>SRA1032224
SRR035087.580854
454 Sequencing (SRP001808)
92
20
-
Asn
GTT
[SRA]
Identical group No.788022 (2 seq.)
>SRA1029123
SRR035087.78250
454 Sequencing (SRP001808)
12
85
+
Asn
GTT
[SRA]
>SRA1029288
SRR035087.103933
454 Sequencing (SRP001808)
12
85
+
Asn
GTT
[SRA]
Identical group No.788046 (1 seq.)
>SRA1029416
SRR035087.124336
454 Sequencing (SRP001808)
212
139
-
Asn
GTT
[SRA]
Identical group No.788339 (1 seq.)
>SRA1032258
SRR035087.589285
454 Sequencing (SRP001808)
273
344
+
Asn
GTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK