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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = TGC
HIT:
40 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.233527 (1 seq.)
>SRA1031600
SRR035087.457865
454 Sequencing (SRP001808)
191
111
-
Ala
TGC
[SRA]
Identical group No.244449 (1 seq.)
>SRA1029394
SRR035087.121038
454 Sequencing (SRP001808)
100
176
+
Ala
TGC
[SRA]
Identical group No.300279 (1 seq.)
>SRA1028809
SRR035087.12817
454 Sequencing (SRP001808)
238
162
-
Ala
TGC
[SRA]
Identical group No.300371 (1 seq.)
>SRA1029596
SRR035087.149869
454 Sequencing (SRP001808)
331
407
+
Ala
TGC
[SRA]
Identical group No.300400 (1 seq.)
>SRA1029769
SRR035087.178367
454 Sequencing (SRP001808)
158
233
+
Ala
TGC
[SRA]
Identical group No.300402 (1 seq.)
>SRA1029772
SRR035087.179061
454 Sequencing (SRP001808)
243
316
+
Ala
TGC
[SRA]
Identical group No.300430 (1 seq.)
>SRA1029944
SRR035087.205693
454 Sequencing (SRP001808)
49
124
+
Ala
TGC
[SRA]
Identical group No.300523 (1 seq.)
>SRA1030462
SRR035087.282017
454 Sequencing (SRP001808)
200
273
+
Ala
TGC
[SRA]
Identical group No.300670 (1 seq.)
>SRA1031374
SRR035087.420780
454 Sequencing (SRP001808)
140
215
+
Ala
TGC
[SRA]
Identical group No.300681 (1 seq.)
>SRA1031453
SRR035087.432418
454 Sequencing (SRP001808)
38
112
+
Ala
TGC
[SRA]
Identical group No.300785 (1 seq.)
>SRA1032155
SRR035087.564815
454 Sequencing (SRP001808)
129
55
-
Ala
TGC
[SRA]
Identical group No.484070 (1 seq.)
>SRA1028961
SRR035087.47700
454 Sequencing (SRP001808)
195
267
+
Ala
TGC
[SRA]
Identical group No.484087 (1 seq.)
>SRA1029091
SRR035087.70851
454 Sequencing (SRP001808)
387
313
-
Ala
TGC
[SRA]
Identical group No.484151 (1 seq.)
>SRA1029467
SRR035087.132058
454 Sequencing (SRP001808)
392
465
+
Ala
TGC
[SRA]
Identical group No.484187 (1 seq.)
>SRA1029691
SRR035087.165460
454 Sequencing (SRP001808)
291
216
-
Ala
TGC
[SRA]
Identical group No.484278 (1 seq.)
>SRA1030272
SRR035087.254688
454 Sequencing (SRP001808)
177
105
-
Ala
TGC
[SRA]
Identical group No.484309 (1 seq.)
>SRA1030511
SRR035087.289241
454 Sequencing (SRP001808)
234
162
-
Ala
TGC
[SRA]
Identical group No.484315 (1 seq.)
>SRA1030559
SRR035087.295768
454 Sequencing (SRP001808)
358
431
+
Ala
TGC
[SRA]
Identical group No.484319 (1 seq.)
>SRA1030588
SRR035087.300898
454 Sequencing (SRP001808)
192
265
+
Ala
TGC
[SRA]
Identical group No.484320 (1 seq.)
>SRA1030589
SRR035087.301016
454 Sequencing (SRP001808)
325
252
-
Ala
TGC
[SRA]
Identical group No.484322 (1 seq.)
>SRA1030596
SRR035087.302364
454 Sequencing (SRP001808)
352
277
-
Ala
TGC
[SRA]
Identical group No.484378 (1 seq.)
>SRA1030937
SRR035087.352440
454 Sequencing (SRP001808)
459
383
-
Ala
TGC
[SRA]
Identical group No.484382 (1 seq.)
>SRA1030964
SRR035087.355313
454 Sequencing (SRP001808)
313
240
-
Ala
TGC
[SRA]
Identical group No.484395 (1 seq.)
>SRA1031085
SRR035087.370310
454 Sequencing (SRP001808)
251
178
-
Ala
TGC
[SRA]
Identical group No.484475 (1 seq.)
>SRA1031675
SRR035087.468619
454 Sequencing (SRP001808)
23
95
+
Ala
TGC
[SRA]
Identical group No.484508 (1 seq.)
>SRA1031917
SRR035087.511839
454 Sequencing (SRP001808)
150
78
-
Ala
TGC
[SRA]
Identical group No.484549 (1 seq.)
>SRA1032198
SRR035087.574256
454 Sequencing (SRP001808)
391
316
-
Ala
TGC
[SRA]
Identical group No.484556 (1 seq.)
>SRA1032270
SRR035087.592049
454 Sequencing (SRP001808)
65
140
+
Ala
TGC
[SRA]
Identical group No.484558 (1 seq.)
>SRA1032301
SRR035087.598026
454 Sequencing (SRP001808)
397
325
-
Ala
TGC
[SRA]
Identical group No.672256 (1 seq.)
>SRA1028928
SRR035087.38082
454 Sequencing (SRP001808)
372
444
+
Ala
TGC
[SRA]
Identical group No.672266 (1 seq.)
>SRA1029011
SRR035087.57949
454 Sequencing (SRP001808)
104
31
-
Ala
TGC
[SRA]
Identical group No.672282 (1 seq.)
>SRA1029093
SRR035087.71557
454 Sequencing (SRP001808)
167
93
-
Ala
TGC
[SRA]
Identical group No.672455 (1 seq.)
>SRA1030497
SRR035087.288051
454 Sequencing (SRP001808)
20
94
+
Ala
TGC
[SRA]
Identical group No.672512 (2 seq.)
>SRA1031035
SRR035087.362981
454 Sequencing (SRP001808)
151
78
-
Ala
TGC
[SRA]
>SRA1031056
SRR035087.365100
454 Sequencing (SRP001808)
151
78
-
Ala
TGC
[SRA]
Identical group No.672560 (1 seq.)
>SRA1031420
SRR035087.427449
454 Sequencing (SRP001808)
457
383
-
Ala
TGC
[SRA]
Identical group No.672606 (1 seq.)
>SRA1031865
SRR035087.500975
454 Sequencing (SRP001808)
126
52
-
Ala
TGC
[SRA]
Identical group No.788003 (1 seq.)
>SRA1028929
SRR035087.38082
454 Sequencing (SRP001808)
449
519
+
Ala
TGC
[SRA]
Identical group No.788069 (1 seq.)
>SRA1029751
SRR035087.175827
454 Sequencing (SRP001808)
356
285
-
Ala
TGC
[SRA]
Identical group No.788173 (1 seq.)
>SRA1031387
SRR035087.422677
454 Sequencing (SRP001808)
238
165
-
Ala
TGC
[SRA]
Identical group No.788334 (1 seq.)
>SRA1030886
SRR035087.343028
454 Sequencing (SRP001808)
193
265
+
Ala
TGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK