This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = TGG
HIT:
68 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3665 (1 seq.)
>SRA1032288
SRR035087.596402
454 Sequencing (SRP001808)
183
275
+
Pro
TGG
[SRA]
Identical group No.234304 (1 seq.)
>SRA1030365
SRR035087.268499
454 Sequencing (SRP001808)
179
258
+
Pro
TGG
[SRA]
Identical group No.234307 (1 seq.)
>SRA1031954
SRR035087.519964
454 Sequencing (SRP001808)
85
164
+
Pro
TGG
[SRA]
Identical group No.235642 (1 seq.)
>SRA1028844
SRR035087.19442
454 Sequencing (SRP001808)
174
99
-
Pro
TGG
[SRA]
Identical group No.235655 (1 seq.)
>SRA1030724
SRR035087.321123
454 Sequencing (SRP001808)
283
205
-
Pro
TGG
[SRA]
Identical group No.235656 (1 seq.)
>SRA1030725
SRR035087.321123
454 Sequencing (SRP001808)
159
83
-
Pro
TGG
[SRA]
Identical group No.235667 (1 seq.)
>SRA1032297
SRR035087.597315
454 Sequencing (SRP001808)
89
167
+
Pro
TGG
[SRA]
Identical group No.244429 (1 seq.)
>SRA1028926
SRR035087.38082
454 Sequencing (SRP001808)
92
166
+
Pro
TGG
[SRA]
Identical group No.244431 (1 seq.)
>SRA1028988
SRR035087.53815
454 Sequencing (SRP001808)
403
326
-
Pro
TGG
[SRA]
Identical group No.244432 (1 seq.)
>SRA1029001
SRR035087.57522
454 Sequencing (SRP001808)
48
125
+
Pro
TGG
[SRA]
Identical group No.244444 (1 seq.)
>SRA1029212
SRR035087.92804
454 Sequencing (SRP001808)
142
219
+
Pro
TGG
[SRA]
Identical group No.244460 (1 seq.)
>SRA1029548
SRR035087.144105
454 Sequencing (SRP001808)
99
22
-
Pro
TGG
[SRA]
Identical group No.244468 (1 seq.)
>SRA1029744
SRR035087.174168
454 Sequencing (SRP001808)
484
407
-
Pro
TGG
[SRA]
Identical group No.244469 (1 seq.)
>SRA1029882
SRR035087.195773
454 Sequencing (SRP001808)
74
149
+
Pro
TGG
[SRA]
Identical group No.244470 (1 seq.)
>SRA1029959
SRR035087.208900
454 Sequencing (SRP001808)
214
289
+
Pro
TGG
[SRA]
Identical group No.244486 (1 seq.)
>SRA1030364
SRR035087.268499
454 Sequencing (SRP001808)
39
116
+
Pro
TGG
[SRA]
Identical group No.244494 (1 seq.)
>SRA1030618
SRR035087.305643
454 Sequencing (SRP001808)
141
64
-
Pro
TGG
[SRA]
Identical group No.244509 (1 seq.)
>SRA1030817
SRR035087.333902
454 Sequencing (SRP001808)
432
358
-
Pro
TGG
[SRA]
Identical group No.244521 (1 seq.)
>SRA1031345
SRR035087.415186
454 Sequencing (SRP001808)
266
192
-
Pro
TGG
[SRA]
Identical group No.244533 (1 seq.)
>SRA1031681
SRR035087.470596
454 Sequencing (SRP001808)
198
276
+
Pro
TGG
[SRA]
Identical group No.300291 (2 seq.)
>SRA1028910
SRR035087.36252
454 Sequencing (SRP001808)
68
144
+
Pro
TGG
[SRA]
>SRA1028994
SRR035087.54809
454 Sequencing (SRP001808)
68
144
+
Pro
TGG
[SRA]
Identical group No.300295 (1 seq.)
>SRA1028925
SRR035087.38082
454 Sequencing (SRP001808)
15
91
+
Pro
TGG
[SRA]
Identical group No.300347 (2 seq.)
>SRA1029414
SRR035087.124090
454 Sequencing (SRP001808)
251
327
+
Pro
TGG
[SRA]
>SRA1030400
SRR035087.274806
454 Sequencing (SRP001808)
250
326
+
Pro
TGG
[SRA]
Identical group No.300351 (1 seq.)
>SRA1029463
SRR035087.130975
454 Sequencing (SRP001808)
340
264
-
Pro
TGG
[SRA]
Identical group No.300355 (1 seq.)
>SRA1029500
SRR035087.137152
454 Sequencing (SRP001808)
121
197
+
Pro
TGG
[SRA]
Identical group No.300364 (1 seq.)
>SRA1029559
SRR035087.145582
454 Sequencing (SRP001808)
256
332
+
Pro
TGG
[SRA]
Identical group No.300367 (1 seq.)
>SRA1029576
SRR035087.148133
454 Sequencing (SRP001808)
210
283
+
Pro
TGG
[SRA]
Identical group No.300372 (1 seq.)
>SRA1029611
SRR035087.150897
454 Sequencing (SRP001808)
132
56
-
Pro
TGG
[SRA]
Identical group No.300386 (1 seq.)
>SRA1029675
SRR035087.162238
454 Sequencing (SRP001808)
178
104
-
Pro
TGG
[SRA]
Identical group No.300415 (1 seq.)
>SRA1029854
SRR035087.192535
454 Sequencing (SRP001808)
335
260
-
Pro
TGG
[SRA]
Identical group No.300441 (1 seq.)
>SRA1030017
SRR035087.216568
454 Sequencing (SRP001808)
206
280
+
Pro
TGG
[SRA]
Identical group No.300489 (1 seq.)
>SRA1030301
SRR035087.259052
454 Sequencing (SRP001808)
490
566
+
Pro
TGG
[SRA]
Identical group No.300511 (1 seq.)
>SRA1030399
SRR035087.274784
454 Sequencing (SRP001808)
379
306
-
Pro
TGG
[SRA]
Identical group No.300519 (1 seq.)
>SRA1030445
SRR035087.280423
454 Sequencing (SRP001808)
108
32
-
Pro
TGG
[SRA]
Identical group No.300545 (1 seq.)
>SRA1030583
SRR035087.299930
454 Sequencing (SRP001808)
375
302
-
Pro
TGG
[SRA]
Identical group No.300564 (1 seq.)
>SRA1030749
SRR035087.325628
454 Sequencing (SRP001808)
284
208
-
Pro
TGG
[SRA]
Identical group No.300577 (1 seq.)
>SRA1030824
SRR035087.335289
454 Sequencing (SRP001808)
191
115
-
Pro
TGG
[SRA]
Identical group No.300683 (1 seq.)
>SRA1031458
SRR035087.433600
454 Sequencing (SRP001808)
483
409
-
Pro
TGG
[SRA]
Identical group No.300689 (1 seq.)
>SRA1031494
SRR035087.438701
454 Sequencing (SRP001808)
163
236
+
Pro
TGG
[SRA]
Identical group No.300697 (1 seq.)
>SRA1031547
SRR035087.447672
454 Sequencing (SRP001808)
407
483
+
Pro
TGG
[SRA]
Identical group No.300709 (1 seq.)
>SRA1031606
SRR035087.458990
454 Sequencing (SRP001808)
319
245
-
Pro
TGG
[SRA]
Identical group No.300735 (1 seq.)
>SRA1031769
SRR035087.484552
454 Sequencing (SRP001808)
257
330
+
Pro
TGG
[SRA]
Identical group No.300751 (1 seq.)
>SRA1031942
SRR035087.516536
454 Sequencing (SRP001808)
6
81
+
Pro
TGG
[SRA]
Identical group No.300759 (1 seq.)
>SRA1032001
SRR035087.529024
454 Sequencing (SRP001808)
338
262
-
Pro
TGG
[SRA]
Identical group No.300767 (1 seq.)
>SRA1032063
SRR035087.542521
454 Sequencing (SRP001808)
232
156
-
Pro
TGG
[SRA]
Identical group No.300768 (1 seq.)
>SRA1032065
SRR035087.543182
454 Sequencing (SRP001808)
492
418
-
Pro
TGG
[SRA]
Identical group No.300790 (1 seq.)
>SRA1032182
SRR035087.570740
454 Sequencing (SRP001808)
108
32
-
Pro
TGG
[SRA]
Identical group No.300805 (1 seq.)
>SRA1032276
SRR035087.593267
454 Sequencing (SRP001808)
164
88
-
Pro
TGG
[SRA]
Identical group No.300807 (1 seq.)
>SRA1032296
SRR035087.597094
454 Sequencing (SRP001808)
339
415
+
Pro
TGG
[SRA]
Identical group No.484058 (2 seq.)
>SRA1028898
SRR035087.34175
454 Sequencing (SRP001808)
63
138
+
Pro
TGG
[SRA]
>SRA1029021
SRR035087.59944
454 Sequencing (SRP001808)
64
139
+
Pro
TGG
[SRA]
Identical group No.484094 (2 seq.)
>SRA1029125
SRR035087.78250
454 Sequencing (SRP001808)
262
335
+
Pro
TGG
[SRA]
>SRA1029290
SRR035087.103933
454 Sequencing (SRP001808)
262
335
+
Pro
TGG
[SRA]
Identical group No.484114 (1 seq.)
>SRA1029226
SRR035087.94717
454 Sequencing (SRP001808)
506
434
-
Pro
TGG
[SRA]
Identical group No.484177 (1 seq.)
>SRA1029622
SRR035087.152304
454 Sequencing (SRP001808)
409
334
-
Pro
TGG
[SRA]
Identical group No.484194 (1 seq.)
>SRA1029732
SRR035087.171753
454 Sequencing (SRP001808)
94
169
+
Pro
TGG
[SRA]
Identical group No.484259 (1 seq.)
>SRA1030141
SRR035087.232995
454 Sequencing (SRP001808)
182
107
-
Pro
TGG
[SRA]
Identical group No.484433 (1 seq.)
>SRA1031429
SRR035087.428121
454 Sequencing (SRP001808)
243
318
+
Pro
TGG
[SRA]
Identical group No.484526 (1 seq.)
>SRA1032017
SRR035087.533565
454 Sequencing (SRP001808)
206
131
-
Pro
TGG
[SRA]
Identical group No.484573 (1 seq.)
>SRA1032420
SRR035087.627629
454 Sequencing (SRP001808)
296
221
-
Pro
TGG
[SRA]
Identical group No.672329 (1 seq.)
>SRA1029512
SRR035087.139678
454 Sequencing (SRP001808)
236
164
-
Pro
TGG
[SRA]
Identical group No.672367 (1 seq.)
>SRA1029810
SRR035087.185749
454 Sequencing (SRP001808)
200
274
+
Pro
TGG
[SRA]
Identical group No.672371 (1 seq.)
>SRA1029837
SRR035087.190446
454 Sequencing (SRP001808)
122
196
+
Pro
TGG
[SRA]
Identical group No.672468 (1 seq.)
>SRA1030620
SRR035087.306079
454 Sequencing (SRP001808)
69
142
+
Pro
TGG
[SRA]
Identical group No.672476 (1 seq.)
>SRA1030740
SRR035087.323321
454 Sequencing (SRP001808)
335
261
-
Pro
TGG
[SRA]
Identical group No.788080 (1 seq.)
>SRA1029941
SRR035087.205415
454 Sequencing (SRP001808)
386
313
-
Pro
TGG
[SRA]
Identical group No.788128 (1 seq.)
>SRA1030696
SRR035087.315826
454 Sequencing (SRP001808)
348
274
-
Pro
TGG
[SRA]
Identical group No.788160 (1 seq.)
>SRA1031179
SRR035087.386243
454 Sequencing (SRP001808)
311
238
-
Pro
TGG
[SRA]
Identical group No.788320 (1 seq.)
>SRA1028843
SRR035087.19045
454 Sequencing (SRP001808)
217
144
-
Pro
TGG
[SRA]
Identical group No.788324 (1 seq.)
>SRA1029254
SRR035087.98538
454 Sequencing (SRP001808)
107
34
-
Pro
TGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK