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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = TGT
HIT:
68 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.21413 (1 seq.)
>SRA1028873
SRR035087.27574
454 Sequencing (SRP001808)
168
259
+
Thr
TGT
[SRA]
Identical group No.90538 (1 seq.)
>SRA1029365
SRR035087.116642
454 Sequencing (SRP001808)
151
64
-
Thr
TGT
[SRA]
Identical group No.157498 (1 seq.)
>SRA1030335
SRR035087.264928
454 Sequencing (SRP001808)
183
268
+
Thr
TGT
[SRA]
Identical group No.244442 (1 seq.)
>SRA1029196
SRR035087.90402
454 Sequencing (SRP001808)
166
240
+
Thr
TGT
[SRA]
Identical group No.244480 (1 seq.)
>SRA1030167
SRR035087.236515
454 Sequencing (SRP001808)
187
261
+
Thr
TGT
[SRA]
Identical group No.244482 (1 seq.)
>SRA1030179
SRR035087.239049
454 Sequencing (SRP001808)
379
303
-
Thr
TGT
[SRA]
Identical group No.300297 (1 seq.)
>SRA1028945
SRR035087.43412
454 Sequencing (SRP001808)
100
176
+
Thr
TGT
[SRA]
Identical group No.300314 (2 seq.)
>SRA1029124
SRR035087.78250
454 Sequencing (SRP001808)
163
239
+
Thr
TGT
[SRA]
>SRA1029289
SRR035087.103933
454 Sequencing (SRP001808)
163
239
+
Thr
TGT
[SRA]
Identical group No.300321 (1 seq.)
>SRA1029205
SRR035087.91834
454 Sequencing (SRP001808)
26
100
+
Thr
TGT
[SRA]
Identical group No.300340 (1 seq.)
>SRA1029368
SRR035087.117747
454 Sequencing (SRP001808)
447
371
-
Thr
TGT
[SRA]
Identical group No.300370 (1 seq.)
>SRA1029594
SRR035087.149843
454 Sequencing (SRP001808)
232
156
-
Thr
TGT
[SRA]
Identical group No.300413 (1 seq.)
>SRA1029847
SRR035087.191370
454 Sequencing (SRP001808)
224
150
-
Thr
TGT
[SRA]
Identical group No.300420 (1 seq.)
>SRA1029877
SRR035087.195586
454 Sequencing (SRP001808)
89
165
+
Thr
TGT
[SRA]
Identical group No.300431 (1 seq.)
>SRA1029945
SRR035087.205693
454 Sequencing (SRP001808)
335
408
+
Thr
TGT
[SRA]
Identical group No.300484 (1 seq.)
>SRA1030289
SRR035087.256665
454 Sequencing (SRP001808)
105
178
+
Thr
TGT
[SRA]
Identical group No.300549 (1 seq.)
>SRA1030624
SRR035087.306192
454 Sequencing (SRP001808)
172
96
-
Thr
TGT
[SRA]
Identical group No.300647 (1 seq.)
>SRA1031245
SRR035087.399189
454 Sequencing (SRP001808)
214
288
+
Thr
TGT
[SRA]
Identical group No.300705 (1 seq.)
>SRA1031578
SRR035087.452671
454 Sequencing (SRP001808)
146
72
-
Thr
TGT
[SRA]
Identical group No.300715 (1 seq.)
>SRA1031641
SRR035087.463883
454 Sequencing (SRP001808)
8
82
+
Thr
TGT
[SRA]
Identical group No.300725 (1 seq.)
>SRA1031712
SRR035087.475698
454 Sequencing (SRP001808)
268
195
-
Thr
TGT
[SRA]
Identical group No.300776 (1 seq.)
>SRA1032109
SRR035087.554029
454 Sequencing (SRP001808)
18
94
+
Thr
TGT
[SRA]
Identical group No.484045 (1 seq.)
>SRA1028858
SRR035087.24385
454 Sequencing (SRP001808)
126
198
+
Thr
TGT
[SRA]
Identical group No.484091 (1 seq.)
>SRA1029114
SRR035087.76425
454 Sequencing (SRP001808)
307
235
-
Thr
TGT
[SRA]
Identical group No.484098 (1 seq.)
>SRA1029141
SRR035087.80918
454 Sequencing (SRP001808)
113
38
-
Thr
TGT
[SRA]
Identical group No.484120 (1 seq.)
>SRA1029269
SRR035087.100392
454 Sequencing (SRP001808)
13
88
+
Thr
TGT
[SRA]
Identical group No.484123 (1 seq.)
>SRA1029294
SRR035087.104302
454 Sequencing (SRP001808)
307
379
+
Thr
TGT
[SRA]
Identical group No.484130 (1 seq.)
>SRA1029334
SRR035087.110425
454 Sequencing (SRP001808)
158
231
+
Thr
TGT
[SRA]
Identical group No.484171 (1 seq.)
>SRA1029582
SRR035087.148953
454 Sequencing (SRP001808)
197
124
-
Thr
TGT
[SRA]
Identical group No.484195 (1 seq.)
>SRA1029741
SRR035087.173861
454 Sequencing (SRP001808)
457
529
+
Thr
TGT
[SRA]
Identical group No.484198 (1 seq.)
>SRA1029779
SRR035087.180318
454 Sequencing (SRP001808)
421
348
-
Thr
TGT
[SRA]
Identical group No.484201 (1 seq.)
>SRA1029803
SRR035087.183977
454 Sequencing (SRP001808)
347
422
+
Thr
TGT
[SRA]
Identical group No.484215 (1 seq.)
>SRA1029878
SRR035087.195586
454 Sequencing (SRP001808)
170
245
+
Thr
TGT
[SRA]
Identical group No.484223 (1 seq.)
>SRA1029911
SRR035087.200014
454 Sequencing (SRP001808)
12
87
+
Thr
TGT
[SRA]
Identical group No.484247 (1 seq.)
>SRA1030074
SRR035087.224395
454 Sequencing (SRP001808)
141
213
+
Thr
TGT
[SRA]
Identical group No.484265 (1 seq.)
>SRA1030172
SRR035087.237705
454 Sequencing (SRP001808)
124
197
+
Thr
TGT
[SRA]
Identical group No.484275 (1 seq.)
>SRA1030248
SRR035087.249051
454 Sequencing (SRP001808)
281
353
+
Thr
TGT
[SRA]
Identical group No.484331 (1 seq.)
>SRA1030635
SRR035087.307783
454 Sequencing (SRP001808)
498
425
-
Thr
TGT
[SRA]
Identical group No.484340 (1 seq.)
>SRA1030741
SRR035087.324147
454 Sequencing (SRP001808)
263
336
+
Thr
TGT
[SRA]
Identical group No.484343 (1 seq.)
>SRA1030745
SRR035087.325088
454 Sequencing (SRP001808)
119
194
+
Thr
TGT
[SRA]
Identical group No.484344 (1 seq.)
>SRA1030756
SRR035087.326990
454 Sequencing (SRP001808)
261
186
-
Thr
TGT
[SRA]
Identical group No.484346 (1 seq.)
>SRA1030771
SRR035087.329967
454 Sequencing (SRP001808)
245
317
+
Thr
TGT
[SRA]
Identical group No.484359 (1 seq.)
>SRA1030829
SRR035087.336274
454 Sequencing (SRP001808)
327
254
-
Thr
TGT
[SRA]
Identical group No.484385 (1 seq.)
>SRA1030983
SRR035087.357317
454 Sequencing (SRP001808)
6
81
+
Thr
TGT
[SRA]
Identical group No.484396 (1 seq.)
>SRA1031087
SRR035087.370705
454 Sequencing (SRP001808)
126
51
-
Thr
TGT
[SRA]
Identical group No.484406 (1 seq.)
>SRA1031187
SRR035087.388493
454 Sequencing (SRP001808)
174
99
-
Thr
TGT
[SRA]
Identical group No.484407 (1 seq.)
>SRA1031194
SRR035087.389443
454 Sequencing (SRP001808)
53
127
+
Thr
TGT
[SRA]
Identical group No.484411 (1 seq.)
>SRA1031217
SRR035087.393090
454 Sequencing (SRP001808)
446
372
-
Thr
TGT
[SRA]
Identical group No.484423 (1 seq.)
>SRA1031316
SRR035087.410749
454 Sequencing (SRP001808)
194
269
+
Thr
TGT
[SRA]
Identical group No.484447 (1 seq.)
>SRA1031493
SRR035087.438517
454 Sequencing (SRP001808)
286
211
-
Thr
TGT
[SRA]
Identical group No.484477 (1 seq.)
>SRA1031692
SRR035087.472637
454 Sequencing (SRP001808)
428
353
-
Thr
TGT
[SRA]
Identical group No.484504 (1 seq.)
>SRA1031885
SRR035087.504162
454 Sequencing (SRP001808)
139
214
+
Thr
TGT
[SRA]
Identical group No.672261 (1 seq.)
>SRA1028956
SRR035087.46162
454 Sequencing (SRP001808)
183
257
+
Thr
TGT
[SRA]
Identical group No.672272 (1 seq.)
>SRA1029056
SRR035087.66663
454 Sequencing (SRP001808)
232
306
+
Thr
TGT
[SRA]
Identical group No.672324 (1 seq.)
>SRA1029464
SRR035087.131584
454 Sequencing (SRP001808)
246
317
+
Thr
TGT
[SRA]
Identical group No.672407 (1 seq.)
>SRA1030125
SRR035087.230735
454 Sequencing (SRP001808)
462
388
-
Thr
TGT
[SRA]
Identical group No.672424 (1 seq.)
>SRA1030226
SRR035087.245806
454 Sequencing (SRP001808)
292
366
+
Thr
TGT
[SRA]
Identical group No.672444 (1 seq.)
>SRA1030416
SRR035087.277339
454 Sequencing (SRP001808)
78
150
+
Thr
TGT
[SRA]
Identical group No.672478 (1 seq.)
>SRA1030754
SRR035087.326385
454 Sequencing (SRP001808)
293
219
-
Thr
TGT
[SRA]
Identical group No.672510 (1 seq.)
>SRA1031024
SRR035087.361306
454 Sequencing (SRP001808)
416
344
-
Thr
TGT
[SRA]
Identical group No.672530 (1 seq.)
>SRA1031175
SRR035087.385346
454 Sequencing (SRP001808)
96
23
-
Thr
TGT
[SRA]
Identical group No.672537 (1 seq.)
>SRA1031206
SRR035087.390799
454 Sequencing (SRP001808)
440
369
-
Thr
TGT
[SRA]
Identical group No.672591 (1 seq.)
>SRA1031685
SRR035087.471401
454 Sequencing (SRP001808)
256
327
+
Thr
TGT
[SRA]
Identical group No.672624 (1 seq.)
>SRA1031991
SRR035087.526736
454 Sequencing (SRP001808)
396
321
-
Thr
TGT
[SRA]
Identical group No.788087 (1 seq.)
>SRA1030014
SRR035087.216227
454 Sequencing (SRP001808)
336
266
-
Thr
TGT
[SRA]
Identical group No.788135 (1 seq.)
>SRA1030897
SRR035087.343919
454 Sequencing (SRP001808)
224
153
-
Thr
TGT
[SRA]
Identical group No.788136 (1 seq.)
>SRA1030905
SRR035087.344355
454 Sequencing (SRP001808)
276
348
+
Thr
TGT
[SRA]
Identical group No.788171 (1 seq.)
>SRA1031367
SRR035087.420265
454 Sequencing (SRP001808)
374
444
+
Thr
TGT
[SRA]
Identical group No.788175 (1 seq.)
>SRA1031395
SRR035087.423365
454 Sequencing (SRP001808)
171
101
-
Thr
TGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK