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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = TTG
HIT:
63 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74723 (1 seq.)
>SRA1029193
SRR035087.90068
454 Sequencing (SRP001808)
61
149
+
Gln
TTG
[SRA]
Identical group No.157536 (1 seq.)
>SRA1032048
SRR035087.540667
454 Sequencing (SRP001808)
188
103
-
Gln
TTG
[SRA]
Identical group No.219643 (2 seq.)
>SRA1031660
SRR035087.466697
454 Sequencing (SRP001808)
105
22
-
Gln
TTG
[SRA]
>SRA1031699
SRR035087.473440
454 Sequencing (SRP001808)
105
22
-
Gln
TTG
[SRA]
Identical group No.244466 (1 seq.)
>SRA1029704
SRR035087.167474
454 Sequencing (SRP001808)
181
104
-
Gln
TTG
[SRA]
Identical group No.244475 (1 seq.)
>SRA1030061
SRR035087.222154
454 Sequencing (SRP001808)
202
279
+
Gln
TTG
[SRA]
Identical group No.244530 (1 seq.)
>SRA1031585
SRR035087.454659
454 Sequencing (SRP001808)
432
355
-
Gln
TTG
[SRA]
Identical group No.300385 (1 seq.)
>SRA1029661
SRR035087.159194
454 Sequencing (SRP001808)
45
121
+
Gln
TTG
[SRA]
Identical group No.300587 (1 seq.)
>SRA1030916
SRR035087.347694
454 Sequencing (SRP001808)
210
134
-
Gln
TTG
[SRA]
Identical group No.300588 (1 seq.)
>SRA1030919
SRR035087.347965
454 Sequencing (SRP001808)
72
145
+
Gln
TTG
[SRA]
Identical group No.300666 (1 seq.)
>SRA1031359
SRR035087.419478
454 Sequencing (SRP001808)
288
362
+
Gln
TTG
[SRA]
Identical group No.484059 (1 seq.)
>SRA1028915
SRR035087.36901
454 Sequencing (SRP001808)
16
90
+
Gln
TTG
[SRA]
Identical group No.484142 (1 seq.)
>SRA1029424
SRR035087.125302
454 Sequencing (SRP001808)
186
261
+
Gln
TTG
[SRA]
Identical group No.484175 (1 seq.)
>SRA1029617
SRR035087.151984
454 Sequencing (SRP001808)
304
229
-
Gln
TTG
[SRA]
Identical group No.484176 (1 seq.)
>SRA1029621
SRR035087.152120
454 Sequencing (SRP001808)
314
389
+
Gln
TTG
[SRA]
Identical group No.484218 (1 seq.)
>SRA1029892
SRR035087.197446
454 Sequencing (SRP001808)
183
111
-
Gln
TTG
[SRA]
Identical group No.484290 (1 seq.)
>SRA1030380
SRR035087.272024
454 Sequencing (SRP001808)
343
269
-
Gln
TTG
[SRA]
Identical group No.484300 (1 seq.)
>SRA1030426
SRR035087.278580
454 Sequencing (SRP001808)
263
338
+
Gln
TTG
[SRA]
Identical group No.484323 (1 seq.)
>SRA1030599
SRR035087.303136
454 Sequencing (SRP001808)
67
142
+
Gln
TTG
[SRA]
Identical group No.484451 (1 seq.)
>SRA1031526
SRR035087.443965
454 Sequencing (SRP001808)
370
442
+
Gln
TTG
[SRA]
Identical group No.484514 (1 seq.)
>SRA1031974
SRR035087.523815
454 Sequencing (SRP001808)
264
189
-
Gln
TTG
[SRA]
Identical group No.484528 (1 seq.)
>SRA1032035
SRR035087.538795
454 Sequencing (SRP001808)
49
121
+
Gln
TTG
[SRA]
Identical group No.484569 (1 seq.)
>SRA1032393
SRR035087.620230
454 Sequencing (SRP001808)
378
306
-
Gln
TTG
[SRA]
Identical group No.672251 (1 seq.)
>SRA1028891
SRR035087.32131
454 Sequencing (SRP001808)
63
134
+
Gln
TTG
[SRA]
Identical group No.672308 (1 seq.)
>SRA1029305
SRR035087.105835
454 Sequencing (SRP001808)
270
196
-
Gln
TTG
[SRA]
Identical group No.672370 (1 seq.)
>SRA1029836
SRR035087.190446
454 Sequencing (SRP001808)
43
117
+
Gln
TTG
[SRA]
Identical group No.672392 (1 seq.)
>SRA1030026
SRR035087.218271
454 Sequencing (SRP001808)
342
414
+
Gln
TTG
[SRA]
Identical group No.672414 (1 seq.)
>SRA1030177
SRR035087.238288
454 Sequencing (SRP001808)
151
222
+
Gln
TTG
[SRA]
Identical group No.672461 (1 seq.)
>SRA1030531
SRR035087.291157
454 Sequencing (SRP001808)
33
109
+
Gln
TTG
[SRA]
Identical group No.672465 (1 seq.)
>SRA1030571
SRR035087.297322
454 Sequencing (SRP001808)
67
140
+
Gln
TTG
[SRA]
Identical group No.672520 (1 seq.)
>SRA1031083
SRR035087.370310
454 Sequencing (SRP001808)
404
331
-
Gln
TTG
[SRA]
Identical group No.672568 (1 seq.)
>SRA1031450
SRR035087.432238
454 Sequencing (SRP001808)
372
298
-
Gln
TTG
[SRA]
Identical group No.672585 (1 seq.)
>SRA1031635
SRR035087.462720
454 Sequencing (SRP001808)
307
381
+
Gln
TTG
[SRA]
Identical group No.672634 (1 seq.)
>SRA1032135
SRR035087.559837
454 Sequencing (SRP001808)
63
139
+
Gln
TTG
[SRA]
Identical group No.672801 (1 seq.)
>SRA1032307
SRR035087.600060
454 Sequencing (SRP001808)
346
272
-
Gln
TTG
[SRA]
Identical group No.787995 (1 seq.)
>SRA1028814
SRR035087.13959
454 Sequencing (SRP001808)
118
191
+
Gln
TTG
[SRA]
Identical group No.788005 (1 seq.)
>SRA1028955
SRR035087.45963
454 Sequencing (SRP001808)
189
260
+
Gln
TTG
[SRA]
Identical group No.788014 (3 seq.)
>SRA1029019
SRR035087.59041
454 Sequencing (SRP001808)
350
277
-
Gln
TTG
[SRA]
>SRA1029324
SRR035087.108680
454 Sequencing (SRP001808)
350
277
-
Gln
TTG
[SRA]
>SRA1030469
SRR035087.283070
454 Sequencing (SRP001808)
350
277
-
Gln
TTG
[SRA]
Identical group No.788020 (1 seq.)
>SRA1029101
SRR035087.73374
454 Sequencing (SRP001808)
155
226
+
Gln
TTG
[SRA]
Identical group No.788027 (1 seq.)
>SRA1029178
SRR035087.87696
454 Sequencing (SRP001808)
324
251
-
Gln
TTG
[SRA]
Identical group No.788043 (1 seq.)
>SRA1029350
SRR035087.114275
454 Sequencing (SRP001808)
416
343
-
Gln
TTG
[SRA]
Identical group No.788068 (1 seq.)
>SRA1029722
SRR035087.170189
454 Sequencing (SRP001808)
168
239
+
Gln
TTG
[SRA]
Identical group No.788074 (1 seq.)
>SRA1029791
SRR035087.181584
454 Sequencing (SRP001808)
20
91
+
Gln
TTG
[SRA]
Identical group No.788085 (1 seq.)
>SRA1029997
SRR035087.214016
454 Sequencing (SRP001808)
141
214
+
Gln
TTG
[SRA]
Identical group No.788089 (1 seq.)
>SRA1030080
SRR035087.224537
454 Sequencing (SRP001808)
404
477
+
Gln
TTG
[SRA]
Identical group No.788104 (1 seq.)
>SRA1030247
SRR035087.249051
454 Sequencing (SRP001808)
191
263
+
Gln
TTG
[SRA]
Identical group No.788115 (1 seq.)
>SRA1030432
SRR035087.279072
454 Sequencing (SRP001808)
463
392
-
Gln
TTG
[SRA]
Identical group No.788126 (1 seq.)
>SRA1030685
SRR035087.314178
454 Sequencing (SRP001808)
63
133
+
Gln
TTG
[SRA]
Identical group No.788130 (1 seq.)
>SRA1030760
SRR035087.327654
454 Sequencing (SRP001808)
124
51
-
Gln
TTG
[SRA]
Identical group No.788132 (1 seq.)
>SRA1030825
SRR035087.335324
454 Sequencing (SRP001808)
144
217
+
Gln
TTG
[SRA]
Identical group No.788137 (1 seq.)
>SRA1030917
SRR035087.347694
454 Sequencing (SRP001808)
128
55
-
Gln
TTG
[SRA]
Identical group No.788142 (1 seq.)
>SRA1031015
SRR035087.360714
454 Sequencing (SRP001808)
100
28
-
Gln
TTG
[SRA]
Identical group No.788145 (1 seq.)
>SRA1031029
SRR035087.362446
454 Sequencing (SRP001808)
488
415
-
Gln
TTG
[SRA]
Identical group No.788167 (1 seq.)
>SRA1031294
SRR035087.406855
454 Sequencing (SRP001808)
307
234
-
Gln
TTG
[SRA]
Identical group No.788172 (1 seq.)
>SRA1031377
SRR035087.421237
454 Sequencing (SRP001808)
95
167
+
Gln
TTG
[SRA]
Identical group No.788199 (1 seq.)
>SRA1031847
SRR035087.498586
454 Sequencing (SRP001808)
284
357
+
Gln
TTG
[SRA]
Identical group No.788204 (1 seq.)
>SRA1031939
SRR035087.516126
454 Sequencing (SRP001808)
171
98
-
Gln
TTG
[SRA]
Identical group No.788213 (1 seq.)
>SRA1032043
SRR035087.539963
454 Sequencing (SRP001808)
80
153
+
Gln
TTG
[SRA]
Identical group No.788219 (1 seq.)
>SRA1032105
SRR035087.553240
454 Sequencing (SRP001808)
41
114
+
Gln
TTG
[SRA]
Identical group No.788238 (1 seq.)
>SRA1032344
SRR035087.609679
454 Sequencing (SRP001808)
254
180
-
Gln
TTG
[SRA]
Identical group No.788327 (1 seq.)
>SRA1030090
SRR035087.226570
454 Sequencing (SRP001808)
275
345
+
Gln
TTG
[SRA]
Identical group No.788328 (1 seq.)
>SRA1030233
SRR035087.246588
454 Sequencing (SRP001808)
96
167
+
Gln
TTG
[SRA]
Identical group No.788330 (1 seq.)
>SRA1030452
SRR035087.281054
454 Sequencing (SRP001808)
503
430
-
Gln
TTG
[SRA]
Identical group No.788333 (1 seq.)
>SRA1030776
SRR035087.330799
454 Sequencing (SRP001808)
285
358
+
Gln
TTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK