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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001809)
Anticodon = AAG
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74730 (4 seq.)
>WENV170612226
FUWD012541889
[FUWD] metagenome; unknown
211
299
+
Leu
AAG
[ENA]
¢þ
>SRA1029758
SRR035087.177031
454 Sequencing (SRP001808)
302
390
+
Leu
AAG
[SRA]
>SRA1033987
SRR035088.433700
454 Sequencing (SRP001809)
211
299
+
Leu
AAG
[SRA]
>SRA1048420
SRR035094.169512
454 Sequencing (SRP001815)
124
36
-
Leu
AAG
[SRA]
Identical group No.98543 (3 seq.)
>WENV170612217
FUWD012539444
[FUWD] metagenome; unknown
166
79
-
Leu
AAG
[ENA]
¢þ
>SRA1033881
SRR035088.390956
454 Sequencing (SRP001809)
286
199
-
Leu
AAG
[SRA]
>SRA1049115
SRR035095.22835
454 Sequencing (SRP001816)
364
451
+
Leu
AAG
[SRA]
Identical group No.112514 (13 seq.)
>WENV170625884
FUWD013208279
[FUWD] metagenome; unknown
2570
2484
-
Leu
AAG
[ENA]
¢þ
>WENV170625886
FUWD013208280
[FUWD] metagenome; unknown
249
163
-
Leu
AAG
[ENA]
¢þ
>WENV170634101
FUWD013409898
[FUWD] metagenome; unknown
2570
2484
-
Leu
AAG
[ENA]
¢þ
>WENV170634103
FUWD013409899
[FUWD] metagenome; unknown
249
163
-
Leu
AAG
[ENA]
¢þ
>SRA1025516
SRR035085.30004
454 Sequencing (SRP001806)
124
210
+
Leu
AAG
[SRA]
>SRA1031203
SRR035087.390745
454 Sequencing (SRP001808)
166
252
+
Leu
AAG
[SRA]
>SRA1034030
SRR035088.458178
454 Sequencing (SRP001809)
116
30
-
Leu
AAG
[SRA]
>SRA1034349
SRR035089.63644
454 Sequencing (SRP001810)
177
91
-
Leu
AAG
[SRA]
>SRA1047774
SRR035094.39415
454 Sequencing (SRP001815)
46
132
+
Leu
AAG
[SRA]
>SRA1048182
SRR035094.123771
454 Sequencing (SRP001815)
306
392
+
Leu
AAG
[SRA]
>SRA1048586
SRR035094.203946
454 Sequencing (SRP001815)
307
393
+
Leu
AAG
[SRA]
>SRA1048852
SRR035094.263604
454 Sequencing (SRP001815)
306
392
+
Leu
AAG
[SRA]
>SRA1049016
SRR035094.314189
454 Sequencing (SRP001815)
124
38
-
Leu
AAG
[SRA]
Identical group No.134859 (2 seq.)
>SRA1033646
SRR035088.311354
454 Sequencing (SRP001809)
309
224
-
Leu
AAG
[SRA]
>SRA1049357
SRR035095.63496
454 Sequencing (SRP001816)
296
211
-
Leu
AAG
[SRA]
Identical group No.144989 (1 seq.)
>SRA1032722
SRR035088.86826
454 Sequencing (SRP001809)
120
32
-
Leu
AAG
[SRA]
Identical group No.144997 (1 seq.)
>SRA1033240
SRR035088.203670
454 Sequencing (SRP001809)
281
198
-
Leu
AAG
[SRA]
Identical group No.165745 (3 seq.)
>WENV170612528
FUWD012628968
[FUWD] metagenome; unknown
176
94
-
Leu
AAG
[ENA]
¢þ
>SRA1034034
SRR035088.459458
454 Sequencing (SRP001809)
79
161
+
Leu
AAG
[SRA]
>SRA1042201
SRR035091.352903
454 Sequencing (SRP001812)
176
94
-
Leu
AAG
[SRA]
Identical group No.174272 (1 seq.)
>SRA1033470
SRR035088.267255
454 Sequencing (SRP001809)
263
348
+
Leu
AAG
[SRA]
Identical group No.174280 (1 seq.)
>SRA1034091
SRR035088.482365
454 Sequencing (SRP001809)
138
52
-
Leu
AAG
[SRA]
Identical group No.186098 (3 seq.)
>WENV170600238
FUWD010115619
[FUWD] metagenome; unknown
484
401
-
Leu
AAG
[ENA]
¢þ
>SRA1030863
SRR035087.341473
454 Sequencing (SRP001808)
251
170
-
Leu
AAG
[SRA]
>SRA1033768
SRR035088.349145
454 Sequencing (SRP001809)
69
152
+
Leu
AAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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