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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001809)
Anticodon = GCG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272954 (5 seq.)
>WENV170621240
FUWD013053543
[FUWD] metagenome; unknown
276
350
+
Arg
GCG
[ENA]
¢þ
>WENV170629420
FUWD013270042
[FUWD] metagenome; unknown
276
350
+
Arg
GCG
[ENA]
¢þ
>SRA1033146
SRR035088.183200
454 Sequencing (SRP001809)
212
286
+
Arg
GCG
[SRA]
>SRA1036750
SRR035089.605992
454 Sequencing (SRP001810)
71
145
+
Arg
GCG
[SRA]
>SRA1040269
SRR035091.69868
454 Sequencing (SRP001812)
247
321
+
Arg
GCG
[SRA]
Identical group No.358472 (4 seq.)
>WENV170613368
FUWD012800133
[FUWD] metagenome; unknown
55
129
+
Arg
GCG
[ENA]
¢þ
>WENV170626504
FUWD013223964
[FUWD] metagenome; unknown
611
537
-
Arg
GCG
[ENA]
¢þ
>SRA1032796
SRR035088.105158
454 Sequencing (SRP001809)
133
59
-
Arg
GCG
[SRA]
>SRA1041118
SRR035091.199504
454 Sequencing (SRP001812)
410
336
-
Arg
GCG
[SRA]
Identical group No.358874 (19 seq.)
>WENV170624311
FUWD013179602
[FUWD] metagenome; unknown
3430
3506
+
Arg
GCG
[ENA]
¢þ
>WENV170632598
FUWD013384921
[FUWD] metagenome; unknown
3430
3506
+
Arg
GCG
[ENA]
¢þ
>SRA1018549
SRR035082.308810
454 Sequencing (SRP001803)
361
437
+
Arg
GCG
[SRA]
>SRA1018615
SRR035082.322433
454 Sequencing (SRP001803)
293
217
-
Arg
GCG
[SRA]
>SRA1033830
SRR035088.368272
454 Sequencing (SRP001809)
288
212
-
Arg
GCG
[SRA]
>SRA1039979
SRR035091.8881
454 Sequencing (SRP001812)
20
96
+
Arg
GCG
[SRA]
>SRA1040335
SRR035091.80670
454 Sequencing (SRP001812)
410
334
-
Arg
GCG
[SRA]
>SRA1040364
SRR035091.85167
454 Sequencing (SRP001812)
239
315
+
Arg
GCG
[SRA]
>SRA1040753
SRR035091.143597
454 Sequencing (SRP001812)
206
130
-
Arg
GCG
[SRA]
>SRA1040866
SRR035091.160897
454 Sequencing (SRP001812)
144
68
-
Arg
GCG
[SRA]
>SRA1041203
SRR035091.213004
454 Sequencing (SRP001812)
157
81
-
Arg
GCG
[SRA]
>SRA1041844
SRR035091.303898
454 Sequencing (SRP001812)
80
4
-
Arg
GCG
[SRA]
>SRA1041896
SRR035091.312805
454 Sequencing (SRP001812)
47
123
+
Arg
GCG
[SRA]
>SRA1042949
SRR035091.472250
454 Sequencing (SRP001812)
100
176
+
Arg
GCG
[SRA]
>SRA1042989
SRR035092.15941
454 Sequencing (SRP001813)
363
287
-
Arg
GCG
[SRA]
>SRA1043930
SRR035092.196474
454 Sequencing (SRP001813)
209
285
+
Arg
GCG
[SRA]
>SRA1044761
SRR035092.335993
454 Sequencing (SRP001813)
344
420
+
Arg
GCG
[SRA]
>SRA1048063
SRR035094.101345
454 Sequencing (SRP001815)
183
107
-
Arg
GCG
[SRA]
>SRA1048648
SRR035094.216176
454 Sequencing (SRP001815)
89
13
-
Arg
GCG
[SRA]
Identical group No.415344 (2 seq.)
>SRA1033026
SRR035088.154199
454 Sequencing (SRP001809)
43
119
+
Arg
GCG
[SRA]
>SRA1047840
SRR035094.51705
454 Sequencing (SRP001815)
298
374
+
Arg
GCG
[SRA]
Identical group No.710811 (9 seq.)
>WENV170608117
FUWD010894958
[FUWD] metagenome; unknown
577
503
-
Arg
GCG
[ENA]
¢þ
>WENV170622806
FUWD013121451
[FUWD] metagenome; unknown
388
462
+
Arg
GCG
[ENA]
¢þ
>WENV170631020
FUWD013335176
[FUWD] metagenome; unknown
388
462
+
Arg
GCG
[ENA]
¢þ
>SRA1018927
SRR035082.371334
454 Sequencing (SRP001803)
132
206
+
Arg
GCG
[SRA]
>SRA1034066
SRR035088.472578
454 Sequencing (SRP001809)
81
7
-
Arg
GCG
[SRA]
>SRA1041347
SRR035091.230435
454 Sequencing (SRP001812)
77
151
+
Arg
GCG
[SRA]
>SRA1042610
SRR035091.415706
454 Sequencing (SRP001812)
333
407
+
Arg
GCG
[SRA]
>SRA1042640
SRR035091.421842
454 Sequencing (SRP001812)
77
151
+
Arg
GCG
[SRA]
>SRA1042904
SRR035091.464873
454 Sequencing (SRP001812)
82
156
+
Arg
GCG
[SRA]
Identical group No.751589 (2 seq.)
>SRA1032573
SRR035088.50907
454 Sequencing (SRP001809)
284
210
-
Arg
GCG
[SRA]
>SRA1032867
SRR035088.118989
454 Sequencing (SRP001809)
284
210
-
Arg
GCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK