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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001809)
Anticodon = TCG
HIT:
18 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.263948 (1 seq.)
>SRA1033766
SRR035088.348381
454 Sequencing (SRP001809)
247
170
-
Arg
TCG
[SRA]
Identical group No.263952 (1 seq.)
>SRA1033930
SRR035088.412517
454 Sequencing (SRP001809)
247
324
+
Arg
TCG
[SRA]
Identical group No.272265 (20 seq.)
>W131157527
AQSK01000112
Unclassified
Cloacimonetes bacterium SCGC AAA252-E13 KSB1 bacterium SCGC AAA252-E13 [AQSK]
10829
10753
-
Arg
TCG
[ENA]
¡û
>W131157610
AQSM01000086
Unclassified
Cloacimonetes bacterium SCGC AAA252-N14 KSB1 bacterium SCGC AAA252-N14 [AQSM]
10216
10140
-
Arg
TCG
[ENA]
¡û
>W131192147
ASKO01000053
Unclassified
Cloacimonetes bacterium SCGC AAA252-M08 KSB1 bacterium SCGC AAA252-M08 [ASKO]
263
339
+
Arg
TCG
[ENA]
¡û
>W131192157
ASKP01000060
Unclassified
Cloacimonetes bacterium SCGC AAA252-L05 KSB1 bacterium SCGC AAA252-L05 [ASKP]
4346
4270
-
Arg
TCG
[ENA]
¡û
>W131192185
ASKQ01000098
Unclassified
Cloacimonetes bacterium SCGC AAA252-O17 KSB1 bacterium SCGC AAA252-O17 [ASKQ]
1297
1373
+
Arg
TCG
[ENA]
¡û
>W131192965
ASNI01000001
Unclassified
Cloacimonetes bacterium SCGC AAA252-N17 KSB1 bacterium SCGC AAA252-N17 [ASNI]
10392
10316
-
Arg
TCG
[ENA]
¡û
>W131193153
ASNQ01000061
Unclassified
Cloacimonetes bacterium SCGC AAA252-K16 KSB1 bacterium SCGC AAA252-K16 [ASNQ]
256
332
+
Arg
TCG
[ENA]
¡û
>W131193158
ASNR01000019
Unclassified
Cloacimonetes bacterium SCGC AAA252-L13 KSB1 bacterium SCGC AAA252-L13 [ASNR]
5724
5800
+
Arg
TCG
[ENA]
¡û
>W131193201
ASNT01000040
Unclassified
Cloacimonetes bacterium SCGC AAA252-P10 KSB1 bacterium SCGC AAA252-P10 [ASNT]
10384
10308
-
Arg
TCG
[ENA]
¡û
>W141139682
AWNX01000021
Unclassified
Cloacimonetes bacterium JGI OTU-1 [AWNX]
10640
10564
-
Arg
TCG
[ENA]
¡û
>WENV170624764
FUWD013186367
[FUWD] metagenome; unknown
1206
1130
-
Arg
TCG
[ENA]
¢þ
>WENV170633040
FUWD013390449
[FUWD] metagenome; unknown
1206
1130
-
Arg
TCG
[ENA]
¢þ
>SRA1025550
SRR035085.37500
454 Sequencing (SRP001806)
401
325
-
Arg
TCG
[SRA]
>SRA1025886
SRR035085.102782
454 Sequencing (SRP001806)
402
326
-
Arg
TCG
[SRA]
>SRA1025972
SRR035085.119514
454 Sequencing (SRP001806)
403
327
-
Arg
TCG
[SRA]
>SRA1031126
SRR035087.377529
454 Sequencing (SRP001808)
274
198
-
Arg
TCG
[SRA]
>SRA1032700
SRR035088.82055
454 Sequencing (SRP001809)
91
15
-
Arg
TCG
[SRA]
>SRA1033378
SRR035088.239777
454 Sequencing (SRP001809)
149
73
-
Arg
TCG
[SRA]
>SRA1048754
SRR035094.241714
454 Sequencing (SRP001815)
32
108
+
Arg
TCG
[SRA]
>SRA1048869
SRR035094.267796
454 Sequencing (SRP001815)
32
108
+
Arg
TCG
[SRA]
Identical group No.272536 (3 seq.)
>WENV170608017
FUWD010883431
[FUWD] metagenome; unknown
293
217
-
Arg
TCG
[ENA]
¢þ
>SRA1034096
SRR035088.485114
454 Sequencing (SRP001809)
255
179
-
Arg
TCG
[SRA]
>SRA1034316
SRR035089.55033
454 Sequencing (SRP001810)
93
17
-
Arg
TCG
[SRA]
Identical group No.272728 (15 seq.)
>W131235311
AULM01000003
Thermodesulfobacteriota
Desulfatiglans anilini DSM 4660 [AULM]
154296
154372
+
Arg
TCG
[ENA]
¡û
>WENV180345965
OBLN01015377
[OBLN] sediment metagenome; sediment
613
689
+
Arg
TCG
[ENA]
¢þ
>WENV183515301
OMKS01056163
[OMKS] sediment metagenome; hot spring sediment
731
805
+
Arg
TCG
[ENA]
¢þ
>WENV183667469
ORJL010651111
[ORJL] groundwater metagenome; groundwater
677
601
-
Arg
TCG
[ENA]
¢þ
>WENV170625366
FUWD013196638
[FUWD] metagenome; unknown
1842
1766
-
Arg
TCG
[ENA]
¢þ
>WENV170625368
FUWD013196639
[FUWD] metagenome; unknown
145
69
-
Arg
TCG
[ENA]
¢þ
>WENV170633606
FUWD013399285
[FUWD] metagenome; unknown
1842
1766
-
Arg
TCG
[ENA]
¢þ
>WENV170633608
FUWD013399286
[FUWD] metagenome; unknown
145
69
-
Arg
TCG
[ENA]
¢þ
>SRA1031726
SRR035087.477717
454 Sequencing (SRP001808)
276
352
+
Arg
TCG
[SRA]
>SRA1033495
SRR035088.271988
454 Sequencing (SRP001809)
399
323
-
Arg
TCG
[SRA]
>SRA1033594
SRR035088.296744
454 Sequencing (SRP001809)
136
60
-
Arg
TCG
[SRA]
>SRA1034136
SRR035088.504591
454 Sequencing (SRP001809)
200
124
-
Arg
TCG
[SRA]
>SRA1035369
SRR035089.292193
454 Sequencing (SRP001810)
228
304
+
Arg
TCG
[SRA]
>SRA1049929
SRR035095.162444
454 Sequencing (SRP001816)
490
414
-
Arg
TCG
[SRA]
>SRA1050237
SRR035095.218579
454 Sequencing (SRP001816)
154
230
+
Arg
TCG
[SRA]
Identical group No.272772 (8 seq.)
>WENV170608061
FUWD010888068
[FUWD] metagenome; unknown
282
358
+
Arg
TCG
[ENA]
¢þ
>SRA1032461
SRR035088.17532
454 Sequencing (SRP001809)
220
144
-
Arg
TCG
[SRA]
>SRA1032952
SRR035088.138779
454 Sequencing (SRP001809)
221
145
-
Arg
TCG
[SRA]
>SRA1033393
SRR035088.244278
454 Sequencing (SRP001809)
128
52
-
Arg
TCG
[SRA]
>SRA1035642
SRR035089.347394
454 Sequencing (SRP001810)
15
91
+
Arg
TCG
[SRA]
>SRA1035919
SRR035089.403774
454 Sequencing (SRP001810)
306
382
+
Arg
TCG
[SRA]
>SRA1048332
SRR035094.149221
454 Sequencing (SRP001815)
292
216
-
Arg
TCG
[SRA]
>SRA1049794
SRR035095.139692
454 Sequencing (SRP001816)
432
356
-
Arg
TCG
[SRA]
Identical group No.314886 (8 seq.)
>WENV183514143
OMKS01012446
[OMKS] sediment metagenome; hot spring sediment
2691
2767
+
Arg
TCG
[ENA]
¢þ
>WENV170572963
FLOH01001728
[FLOH] marine metagenome; water
1989
1913
-
Arg
TCG
[ENA]
¢þ
>WENV170621717
FUWD013070555
[FUWD] metagenome; unknown
386
310
-
Arg
TCG
[ENA]
¢þ
>WENV170629904
FUWD013286248
[FUWD] metagenome; unknown
386
310
-
Arg
TCG
[ENA]
¢þ
>SRA1033161
SRR035088.187446
454 Sequencing (SRP001809)
280
204
-
Arg
TCG
[SRA]
>SRA1033480
SRR035088.269440
454 Sequencing (SRP001809)
101
177
+
Arg
TCG
[SRA]
>W10123461
ADZZ01000709
Unclassified
delta proteobacterium NaphS2 [ADZZ]
134
210
+
Arg
TCG
[ENA]
¡û
>W11130259
ADZZ01000709
Unclassified
delta proteobacterium NaphS2 [ADZZ]
134
210
+
Arg
TCG
[ENA]
¡û
Identical group No.321229 (10 seq.)
>WENV170620212
FUWD013027450
[FUWD] metagenome; unknown
7278
7202
-
Arg
TCG
[ENA]
¢þ
>WENV170628348
FUWD013245228
[FUWD] metagenome; unknown
7278
7202
-
Arg
TCG
[ENA]
¢þ
>SRA1032630
SRR035088.66998
454 Sequencing (SRP001809)
192
116
-
Arg
TCG
[SRA]
>SRA1033579
SRR035088.293243
454 Sequencing (SRP001809)
183
107
-
Arg
TCG
[SRA]
>SRA1040507
SRR035091.107240
454 Sequencing (SRP001812)
307
383
+
Arg
TCG
[SRA]
>SRA1040583
SRR035091.118691
454 Sequencing (SRP001812)
28
104
+
Arg
TCG
[SRA]
>SRA1040670
SRR035091.130488
454 Sequencing (SRP001812)
253
177
-
Arg
TCG
[SRA]
>SRA1041637
SRR035091.272435
454 Sequencing (SRP001812)
219
143
-
Arg
TCG
[SRA]
>SRA1050365
SRR035095.244956
454 Sequencing (SRP001816)
99
175
+
Arg
TCG
[SRA]
>SRA1054808
SRR035099.218877
454 Sequencing (SRP001820)
493
417
-
Arg
TCG
[SRA]
Identical group No.357703 (3 seq.)
>WENV170603296
FUWD010299431
[FUWD] metagenome; unknown
3
79
+
Arg
TCG
[ENA]
¢þ
>SRA1020392
SRR035083.106807
454 Sequencing (SRP001804)
168
244
+
Arg
TCG
[SRA]
>SRA1033391
SRR035088.244145
454 Sequencing (SRP001809)
366
290
-
Arg
TCG
[SRA]
Identical group No.357708 (6 seq.)
>WENV170603351
FUWD010304657
[FUWD] metagenome; unknown
724
648
-
Arg
TCG
[ENA]
¢þ
>SRA1032945
SRR035088.137027
454 Sequencing (SRP001809)
283
207
-
Arg
TCG
[SRA]
>SRA1037149
SRR035090.82107
454 Sequencing (SRP001811)
300
376
+
Arg
TCG
[SRA]
>SRA1037761
SRR035090.189907
454 Sequencing (SRP001811)
300
376
+
Arg
TCG
[SRA]
>SRA1038692
SRR035090.350491
454 Sequencing (SRP001811)
15
91
+
Arg
TCG
[SRA]
>C131010897
CP003985
Thermodesulfobacteriota
Desulfocapsa sulfexigens DSM 10523 [CP003985]
2669081
2669005
-
Arg
TCG
[Ensembl]
¡û
Identical group No.358770 (4 seq.)
>WENV170622553
FUWD013109322
[FUWD] metagenome; unknown
861
785
-
Arg
TCG
[ENA]
¢þ
>WENV170630769
FUWD013323489
[FUWD] metagenome; unknown
861
785
-
Arg
TCG
[ENA]
¢þ
>SRA1033667
SRR035088.318462
454 Sequencing (SRP001809)
321
245
-
Arg
TCG
[SRA]
>SRA1033721
SRR035088.335510
454 Sequencing (SRP001809)
78
2
-
Arg
TCG
[SRA]
Identical group No.358914 (5 seq.)
>WENV170625997
FUWD013211219
[FUWD] metagenome; unknown
1268
1342
+
Arg
TCG
[ENA]
¢þ
>WENV170631942
FUWD013372929
[FUWD] metagenome; unknown
5257
5183
-
Arg
TCG
[ENA]
¢þ
>SRA1033857
SRR035088.379903
454 Sequencing (SRP001809)
256
330
+
Arg
TCG
[SRA]
>SRA1042267
SRR035091.364676
454 Sequencing (SRP001812)
229
303
+
Arg
TCG
[SRA]
>SRA1049381
SRR035095.67188
454 Sequencing (SRP001816)
208
134
-
Arg
TCG
[SRA]
Identical group No.415331 (1 seq.)
>SRA1032811
SRR035088.107783
454 Sequencing (SRP001809)
73
-1
-
Arg
TCG
[SRA]
Identical group No.415349 (2 seq.)
>SRA1033095
SRR035088.172122
454 Sequencing (SRP001809)
72
148
+
Arg
TCG
[SRA]
>SRA1034151
SRR035088.510328
454 Sequencing (SRP001809)
104
180
+
Arg
TCG
[SRA]
Identical group No.415364 (1 seq.)
>SRA1033270
SRR035088.211022
454 Sequencing (SRP001809)
86
10
-
Arg
TCG
[SRA]
Identical group No.415365 (1 seq.)
>SRA1033272
SRR035088.211714
454 Sequencing (SRP001809)
136
210
+
Arg
TCG
[SRA]
Identical group No.415390 (1 seq.)
>SRA1033665
SRR035088.318357
454 Sequencing (SRP001809)
214
138
-
Arg
TCG
[SRA]
Identical group No.751608 (1 seq.)
>SRA1033061
SRR035088.162953
454 Sequencing (SRP001809)
228
154
-
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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