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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001819)
Anticodon = TCG
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.358581 (3 seq.)
>WENV170617811
FUWD012937570
[FUWD] metagenome; unknown
360
436
+
Arg
TCG
[ENA]
¢þ
>SRA1051482
SRR035098.12934
454 Sequencing (SRP001819)
335
259
-
Arg
TCG
[SRA]
>SRA1051531
SRR035098.23071
454 Sequencing (SRP001819)
335
259
-
Arg
TCG
[SRA]
Identical group No.422592 (1 seq.)
>SRA1052313
SRR035098.179770
454 Sequencing (SRP001819)
19
93
+
Arg
TCG
[SRA]
Identical group No.422626 (1 seq.)
>SRA1053562
SRR035098.437505
454 Sequencing (SRP001819)
122
198
+
Arg
TCG
[SRA]
Identical group No.548854 (4 seq.)
>WENV170623492
FUWD013153375
[FUWD] metagenome; unknown
334
409
+
Arg
TCG
[ENA]
¢þ
>WENV170631757
FUWD013364228
[FUWD] metagenome; unknown
334
409
+
Arg
TCG
[ENA]
¢þ
>SRA1053524
SRR035098.426058
454 Sequencing (SRP001819)
66
141
+
Arg
TCG
[SRA]
>SRA1053868
SRR035098.521439
454 Sequencing (SRP001819)
67
142
+
Arg
TCG
[SRA]
Identical group No.548910 (4 seq.)
>WENV170625109
FUWD013191671
[FUWD] metagenome; unknown
3457
3382
-
Arg
TCG
[ENA]
¢þ
>WENV170633366
FUWD013394948
[FUWD] metagenome; unknown
3457
3382
-
Arg
TCG
[ENA]
¢þ
>SRA1052184
SRR035098.157368
454 Sequencing (SRP001819)
312
387
+
Arg
TCG
[SRA]
>SRA1052424
SRR035098.200200
454 Sequencing (SRP001819)
62
137
+
Arg
TCG
[SRA]
Identical group No.620516 (1 seq.)
>SRA1053236
SRR035098.366304
454 Sequencing (SRP001819)
344
268
-
Arg
TCG
[SRA]
Identical group No.620521 (1 seq.)
>SRA1053441
SRR035098.405475
454 Sequencing (SRP001819)
95
22
-
Arg
TCG
[SRA]
Identical group No.672677 (10 seq.)
>WENV183624097
OOGB01025480
[OOGB] marine metagenome; sea ice
448
374
-
Arg
TCG
[ENA]
¢þ
>WENV170326084
CEST01087092
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1844
1770
-
Arg
TCG
[ENA]
¢þ
>WENV170627002
FUWD013230692
[FUWD] metagenome; unknown
10724
10650
-
Arg
TCG
[ENA]
¢þ
>WENV170628933
FUWD013256697
[FUWD] metagenome; unknown
309371
309297
-
Arg
TCG
[ENA]
¢þ
>WENV170919159
MDTF01006558
[MDTF] marine metagenome; seawater
9345
9271
-
Arg
TCG
[ENA]
¢þ
>WENV170953933
MEHZ011679565
[MEHZ] marine metagenome; marine surface water
4566
4492
-
Arg
TCG
[ENA]
¢þ
>SRA1023998
SRR035084.226242
454 Sequencing (SRP001805)
460
386
-
Arg
TCG
[SRA]
>SRA1045271
SRR035093.48639
454 Sequencing (SRP001814)
240
314
+
Arg
TCG
[SRA]
>SRA1052056
SRR035098.132195
454 Sequencing (SRP001819)
263
337
+
Arg
TCG
[SRA]
>SRA1052745
SRR035098.265324
454 Sequencing (SRP001819)
266
340
+
Arg
TCG
[SRA]
Identical group No.672753 (4 seq.)
>WENV170626800
FUWD013229601
[FUWD] metagenome; unknown
1922
1850
-
Arg
TCG
[ENA]
¢þ
>WENV170631098
FUWD013338399
[FUWD] metagenome; unknown
16665
16593
-
Arg
TCG
[ENA]
¢þ
>SRA1046816
SRR035093.392230
454 Sequencing (SRP001814)
309
237
-
Arg
TCG
[SRA]
>SRA1053211
SRR035098.362612
454 Sequencing (SRP001819)
94
22
-
Arg
TCG
[SRA]
Identical group No.710462 (3 seq.)
>WENV170599175
FUWD010065754
[FUWD] metagenome; unknown
669
595
-
Arg
TCG
[ENA]
¢þ
>SRA1050931
SRR035096.54062
454 Sequencing (SRP001817)
516
442
-
Arg
TCG
[SRA]
>SRA1053546
SRR035098.434226
454 Sequencing (SRP001819)
121
195
+
Arg
TCG
[SRA]
Identical group No.711144 (2 seq.)
>WENV170612908
FUWD012739061
[FUWD] metagenome; unknown
215
289
+
Arg
TCG
[ENA]
¢þ
>SRA1051762
SRR035098.72723
454 Sequencing (SRP001819)
215
289
+
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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