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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = AAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.422420 (9 seq.)
>W1711190245
LWRY01000053
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
14598
14524
-
Phe
AAA
[ENA]
¡û
>W1711190320
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
21082
21156
+
Phe
AAA
[ENA]
¡û
>W1711190424
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
6856
6782
-
Phe
AAA
[ENA]
¡û
>W1711190552
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
6888
6814
-
Phe
AAA
[ENA]
¡û
>W1711190600
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
13025
12951
-
Phe
AAA
[ENA]
¡û
>W1711190661
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
16897
16971
+
Phe
AAA
[ENA]
¡û
>W1711293186
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
6874
6800
-
Phe
AAA
[ENA]
¡û
>W141206809
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
6785
6711
-
Phe
AAA
[ENA]
¡û
>W1710743662
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
23621
23695
+
Phe
AAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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