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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CAG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.57106 (1 seq.)
>C09100405
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1028227
1028140
-
Leu
CAG
[Ensembl]
¡û
Identical group No.78568 (1 seq.)
>W141262927
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
239772
239686
-
Leu
CAG
[ENA]
¡û
Identical group No.94566 (2 seq.)
>W1710798671
LJTU01000044
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
15164
15078
-
Leu
CAG
[ENA]
¡û
>W1610662628
LJTU01000044
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
15164
15078
-
Leu
CAG
[ENA]
¡û
Identical group No.115530 (1 seq.)
>W131231759
AUIS01000002
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
6801
6716
-
Leu
CAG
[ENA]
¡û
Identical group No.134790 (2 seq.)
>W10127950
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
872
788
-
Leu
CAG
[ENA]
¡û
>W11135495
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
872
788
-
Leu
CAG
[ENA]
¡û
Identical group No.142748 (9 seq.)
>W1711190251
LWRY01000053
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
13851
13768
-
Leu
CAG
[ENA]
¡û
>W1711190326
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
21829
21912
+
Leu
CAG
[ENA]
¡û
>W1711190430
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
6109
6026
-
Leu
CAG
[ENA]
¡û
>W1711190558
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
6141
6058
-
Leu
CAG
[ENA]
¡û
>W1711190606
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
12278
12195
-
Leu
CAG
[ENA]
¡û
>W1711190667
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
17644
17727
+
Leu
CAG
[ENA]
¡û
>W1711293192
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
6127
6044
-
Leu
CAG
[ENA]
¡û
>W141206815
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
6038
5955
-
Leu
CAG
[ENA]
¡û
>W1710743668
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
24368
24451
+
Leu
CAG
[ENA]
¡û
Identical group No.210978 (7 seq.)
>W1711190338
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
2892
2968
+
Leu
CAG
[ENA]
¡û
>W1711190458
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
10282
10206
-
Leu
CAG
[ENA]
¡û
>W1711190521
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
6365
6441
+
Leu
CAG
[ENA]
¡û
>W1711190731
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
3913
3989
+
Leu
CAG
[ENA]
¡û
>W1711293140
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
10300
10224
-
Leu
CAG
[ENA]
¡û
>W141206746
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
135654
135730
+
Leu
CAG
[ENA]
¡û
>W141695575
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
17391
17315
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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