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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CAG
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.57106 (1 seq.)
>C09100405
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1028227
1028140
-
Leu
CAG
[Ensembl]
¡û
Identical group No.73976 (11 seq.)
>W1711220188
LXQG01000052
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
8313
8227
-
Leu
CAG
[ENA]
¡û
>W1711292951
LZYE01000007
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
5017
4931
-
Leu
CAG
[ENA]
¡û
>W1711293000
LZYF01000030
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
5012
4926
-
Leu
CAG
[ENA]
¡û
>W1711293072
LZYG01000358
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
7548
7634
+
Leu
CAG
[ENA]
¡û
>W1711293092
LZYH01000427
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
5701
5787
+
Leu
CAG
[ENA]
¡û
>WENV181406594
OGCG01000595
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
2032
1946
-
Leu
CAG
[ENA]
¢þ
>C181130836
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
883352
883266
-
Leu
CAG
-
¡û
>W09134914
ACVD01000073
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
82639
82553
-
Leu
CAG
[ENA]
¡û
>C151007974
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
964183
964097
-
Leu
CAG
[Ensembl]
¡û
>C11100515
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
987644
987558
-
Leu
CAG
[Ensembl]
¡û
>W1611004660
LXQG01000052
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
8313
8227
-
Leu
CAG
[ENA]
¡û
Identical group No.74656 (38 seq.)
>W1710777634
LJBT01000008
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
50960
50874
-
Leu
CAG
[ENA]
¡û
>W1711010483
LQRJ01000061
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
37039
36953
-
Leu
CAG
[ENA]
¡û
>W1711168364
LVXZ01000181
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
9488
9574
+
Leu
CAG
[ENA]
¡û
>W1711169896
LVZL01000093
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
61725
61639
-
Leu
CAG
[ENA]
¡û
>W1711190287
LWRY01000280
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
33338
33252
-
Leu
CAG
[ENA]
¡û
>W1711190386
LWRZ01000322
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
9162
9248
+
Leu
CAG
[ENA]
¡û
>W1711190391
LWSA01000001
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
41167
41081
-
Leu
CAG
[ENA]
¡û
>W1711190484
LWSB01000018
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
9208
9294
+
Leu
CAG
[ENA]
¡û
>W1711190641
LWSC01000298
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
44646
44560
-
Leu
CAG
[ENA]
¡û
>W1711190700
LWSD01000181
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
9160
9246
+
Leu
CAG
[ENA]
¡û
>W1711293199
LZYI01000136
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
10460
10374
-
Leu
CAG
[ENA]
¡û
>W1711312184
MASQ01000140
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
11075
10989
-
Leu
CAG
[ENA]
¡û
>W1711585837
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
914425
914339
-
Leu
CAG
[ENA]
¡û
>WENV181296324
OFHJ01025476
[OFHJ] soil metagenome; Clay
614
528
-
Leu
CAG
[ENA]
¢þ
>W141206776
AZMO01000024
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
42046
41960
-
Leu
CAG
[ENA]
¡û
>W141262905
CCCS020000034
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
53749
53835
+
Leu
CAG
[ENA]
¡û
>C08000433
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
1528154
1528071
-
Leu
CAG
[Ensembl]
¡û
>WENV170008366
AOMP01000528
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
2289
2375
+
Leu
CAG
[ENA]
¢þ
>WENV170008654
AOMQ01013973
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
207
292
+
Leu
CAG
[ENA]
¢þ
>C191005122
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
2763874
2763788
-
Leu
CAG
-
¡û
>W141695591
JMEB01000189
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
71322
71408
+
Leu
CAG
[ENA]
¡û
>W141738840
JNNH01000728
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
461
547
+
Leu
CAG
[ENA]
¡û
>C09100386
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1649194
1649108
-
Leu
CAG
[Ensembl]
¡û
>W1910831859
MXAV01000044
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
48179
48093
-
Leu
CAG
[ENA]
¡û
>W1810257110
PQJK01000001
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
340097
340183
+
Leu
CAG
[ENA]
¡û
>W1810679264
QKQP01000001
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
5460
5546
+
Leu
CAG
[ENA]
¡û
>W10127972
AEFB01000286
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1976
2062
+
Leu
CAG
[ENA]
¡û
>C11100751
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
1444323
1444237
-
Leu
CAG
[Ensembl]
¡û
>W11135517
AEFB01000286
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1976
2062
+
Leu
CAG
[ENA]
¡û
>W11164265
AFJD01000005
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
40679
40765
+
Leu
CAG
[ENA]
¡û
>W11168516
AFOH01000003
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
13210
13296
+
Leu
CAG
[ENA]
¡û
>W1610627886
LIEB01000008
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
50934
50848
-
Leu
CAG
[ENA]
¡û
>W1610641820
LJBT01000008
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
50960
50874
-
Leu
CAG
[ENA]
¡û
>W1610859003
LQRJ01000061
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
37039
36953
-
Leu
CAG
[ENA]
¡û
>W1610978279
LVXZ01000181
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
9488
9574
+
Leu
CAG
[ENA]
¡û
>W1611057385
MASQ01000140
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
11075
10989
-
Leu
CAG
[ENA]
¡û
>W1710743700
LGYM01000034
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
74452
74538
+
Leu
CAG
[ENA]
¡û
>W1710759013
LIEB01000008
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
50934
50848
-
Leu
CAG
[ENA]
¡û
Identical group No.78568 (1 seq.)
>W141262927
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
239772
239686
-
Leu
CAG
[ENA]
¡û
Identical group No.94566 (2 seq.)
>W1710798671
LJTU01000044
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
15164
15078
-
Leu
CAG
[ENA]
¡û
>W1610662628
LJTU01000044
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
15164
15078
-
Leu
CAG
[ENA]
¡û
Identical group No.115530 (1 seq.)
>W131231759
AUIS01000002
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
6801
6716
-
Leu
CAG
[ENA]
¡û
Identical group No.124981 (14 seq.)
>W1710799205
LJUK01000230
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
5441
5525
+
Leu
CAG
[ENA]
¡û
>W1710799753
LJVB01000027
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
15615
15699
+
Leu
CAG
[ENA]
¡û
>W1711403012
MFSP01000086
Unclassified
Candidatus Muproteobacteria bacterium RBG_16_60_9 [MFSP]
37656
37572
-
Leu
CAG
[ENA]
¡û
>W1711403043
MFSQ01000096
Unclassified
Candidatus Muproteobacteria bacterium RBG_16_62_13 [MFSQ]
3230
3146
-
Leu
CAG
[ENA]
¡û
>W1711403073
MFSR01000081
Unclassified
Candidatus Muproteobacteria bacterium RBG_16_64_10 [MFSR]
2657
2741
+
Leu
CAG
[ENA]
¡û
>W1711403121
MFST01000154
Unclassified
Candidatus Muproteobacteria bacterium RBG_16_65_31 [MFST]
1960
1876
-
Leu
CAG
[ENA]
¡û
>W1711403153
MFSU01000099
Unclassified
Candidatus Muproteobacteria bacterium RBG_16_65_34 [MFSU]
18641
18557
-
Leu
CAG
[ENA]
¡û
>WENV180350639
OBLQ010005127
[OBLQ] soil metagenome; soil
2472
2556
+
Leu
CAG
[ENA]
¢þ
>WENV180352174
OBLQ010186399
[OBLQ] soil metagenome; soil
200
116
-
Leu
CAG
[ENA]
¢þ
>C181000815
AP014879
Gammaproteobacteria
Sulfuricaulis limicola HA5 [AP014879]
1314676
1314592
-
Leu
CAG
-
¡û
>W1910714584
MFSY01000075
Unclassified
Candidatus Muproteobacteria bacterium RIFCSPHIGHO2_01_FULL_65_16 [MFSY]
3698
3782
+
Leu
CAG
[ENA]
¡û
>W1910714623
MFTA01000039
Unclassified
Candidatus Muproteobacteria bacterium RIFCSPHIGHO2_02_FULL_65_16 [MFTA]
1577
1493
-
Leu
CAG
[ENA]
¡û
>W1610663162
LJUK01000230
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
5441
5525
+
Leu
CAG
[ENA]
¡û
>W1610663710
LJVB01000027
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
15615
15699
+
Leu
CAG
[ENA]
¡û
Identical group No.134790 (2 seq.)
>W10127950
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
872
788
-
Leu
CAG
[ENA]
¡û
>W11135495
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
872
788
-
Leu
CAG
[ENA]
¡û
Identical group No.142748 (9 seq.)
>W1711190251
LWRY01000053
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
13851
13768
-
Leu
CAG
[ENA]
¡û
>W1711190326
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
21829
21912
+
Leu
CAG
[ENA]
¡û
>W1711190430
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
6109
6026
-
Leu
CAG
[ENA]
¡û
>W1711190558
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
6141
6058
-
Leu
CAG
[ENA]
¡û
>W1711190606
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
12278
12195
-
Leu
CAG
[ENA]
¡û
>W1711190667
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
17644
17727
+
Leu
CAG
[ENA]
¡û
>W1711293192
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
6127
6044
-
Leu
CAG
[ENA]
¡û
>W141206815
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
6038
5955
-
Leu
CAG
[ENA]
¡û
>W1710743668
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
24368
24451
+
Leu
CAG
[ENA]
¡û
Identical group No.210978 (7 seq.)
>W1711190338
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
2892
2968
+
Leu
CAG
[ENA]
¡û
>W1711190458
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
10282
10206
-
Leu
CAG
[ENA]
¡û
>W1711190521
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
6365
6441
+
Leu
CAG
[ENA]
¡û
>W1711190731
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
3913
3989
+
Leu
CAG
[ENA]
¡û
>W1711293140
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
10300
10224
-
Leu
CAG
[ENA]
¡û
>W141206746
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
135654
135730
+
Leu
CAG
[ENA]
¡û
>W141695575
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
17391
17315
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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