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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CAT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275698 (1 seq.)
>W141738820
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
12458
12534
+
Met
CAT
[ENA]
¡û
Identical group No.281173 (1 seq.)
>C09100401
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1029114
1029039
-
Met
CAT
[Ensembl]
¡û
Identical group No.317772 (9 seq.)
>W143004121
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
6706
6631
-
Met
CAT
[ENA]
¡û
>W1730013214
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
23700
23775
+
Met
CAT
[ENA]
¡û
>W1730023171
LWRY01000053
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
14519
14444
-
Met
CAT
[ENA]
¡û
>W1730023176
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
21161
21236
+
Met
CAT
[ENA]
¡û
>W1730023190
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
6777
6702
-
Met
CAT
[ENA]
¡û
>W1730023204
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
6809
6734
-
Met
CAT
[ENA]
¡û
>W1730023210
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
12946
12871
-
Met
CAT
[ENA]
¡û
>W1730023214
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
16976
17051
+
Met
CAT
[ENA]
¡û
>W1730025110
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
6795
6720
-
Met
CAT
[ENA]
¡û
Identical group No.317913 (9 seq.)
>W1711190246
LWRY01000053
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
14333
14258
-
Met
CAT
[ENA]
¡û
>W1711190321
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
21347
21422
+
Met
CAT
[ENA]
¡û
>W1711190425
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
6591
6516
-
Met
CAT
[ENA]
¡û
>W1711190553
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
6623
6548
-
Met
CAT
[ENA]
¡û
>W1711190601
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
12760
12685
-
Met
CAT
[ENA]
¡û
>W1711190662
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
17162
17237
+
Met
CAT
[ENA]
¡û
>W1711293187
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
6609
6534
-
Met
CAT
[ENA]
¡û
>W141206810
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
6520
6445
-
Met
CAT
[ENA]
¡û
>W1710743663
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
23886
23961
+
Met
CAT
[ENA]
¡û
Identical group No.319212 (7 seq.)
>W1711190335
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
2327
2402
+
Met
CAT
[ENA]
¡û
>W1711190455
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
10847
10772
-
Met
CAT
[ENA]
¡û
>W1711190518
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
5800
5875
+
Met
CAT
[ENA]
¡û
>W1711190728
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
3348
3423
+
Met
CAT
[ENA]
¡û
>W1711293137
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
10865
10790
-
Met
CAT
[ENA]
¡û
>W141206743
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
135089
135164
+
Met
CAT
[ENA]
¡û
>W141695572
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
17953
17878
-
Met
CAT
[ENA]
¡û
Identical group No.368435 (2 seq.)
>W10127946
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1651
1576
-
Met
CAT
[ENA]
¡û
>W11135491
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1651
1576
-
Met
CAT
[ENA]
¡û
Identical group No.393278 (1 seq.)
>W141738821
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
15728
15803
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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