This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CCA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183609 (1 seq.)
>C09100387
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1036012
1035936
-
Trp
CCA
[Ensembl]
¡û
Identical group No.317908 (9 seq.)
>W1711190269
LWRY01000155
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
7889
7814
-
Trp
CCA
[ENA]
¡û
>W1711190308
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
18708
18783
+
Trp
CCA
[ENA]
¡û
>W1711190412
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
9230
9155
-
Trp
CCA
[ENA]
¡û
>W1711190540
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
9262
9187
-
Trp
CCA
[ENA]
¡û
>W1711190588
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
15399
15324
-
Trp
CCA
[ENA]
¡û
>W1711190649
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
14523
14598
+
Trp
CCA
[ENA]
¡û
>W1711293174
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
9248
9173
-
Trp
CCA
[ENA]
¡û
>W141206797
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
9159
9084
-
Trp
CCA
[ENA]
¡û
>W1710743650
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
21247
21322
+
Trp
CCA
[ENA]
¡û
Identical group No.319205 (6 seq.)
>W1711190358
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
6536
6611
+
Trp
CCA
[ENA]
¡û
>W1711190569
LWSB01000258
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
56
131
+
Trp
CCA
[ENA]
¡û
>W1711190710
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
3205
3130
-
Trp
CCA
[ENA]
¡û
>W1711293119
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
17449
17374
-
Trp
CCA
[ENA]
¡û
>W141206725
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
128505
128580
+
Trp
CCA
[ENA]
¡û
>W141695554
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
24862
24787
-
Trp
CCA
[ENA]
¡û
Identical group No.319218 (1 seq.)
>W141206820
AZMO01000089
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
548
622
+
Trp
CCA
[ENA]
¡û
Identical group No.393276 (1 seq.)
>W141738810
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
8553
8628
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK