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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CCG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.209785 (13 seq.)
>W1711190231
LWRY01000015
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
17211
17135
-
Arg
CCG
[ENA]
¡û
>W1711190300
LWRZ01000011
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
11071
10995
-
Arg
CCG
[ENA]
¡û
>W1711190468
LWSA01000300
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
43508
43432
-
Arg
CCG
[ENA]
¡û
>W1711190485
LWSB01000018
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
81136
81212
+
Arg
CCG
[ENA]
¡û
>W1711190577
LWSC01000004
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
17211
17135
-
Arg
CCG
[ENA]
¡û
>W1711190642
LWSD01000005
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
59784
59860
+
Arg
CCG
[ENA]
¡û
>W1711293200
LZYI01000139
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
30177
30253
+
Arg
CCG
[ENA]
¡û
>W1711585824
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
2382901
2382825
-
Arg
CCG
[ENA]
¡û
>W141206763
AZMO01000004
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
78999
79075
+
Arg
CCG
[ENA]
¡û
>W141695550
JMEB01000085
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
7865
7789
-
Arg
CCG
[ENA]
¡û
>W1910831842
MXAV01000033
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
117879
117955
+
Arg
CCG
[ENA]
¡û
>W11168520
AFOH01000010
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
4512
4588
+
Arg
CCG
[ENA]
¡û
>W1710743711
LGYM01000036
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
152725
152649
-
Arg
CCG
[ENA]
¡û
Identical group No.269419 (1 seq.)
>W131231787
AUIS01000022
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
7832
7908
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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