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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CCG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276701 (11 seq.)
>W1711220201
LXQG01000068
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
618
542
-
Arg
CCG
[ENA]
¡û
>W1711292970
LZYE01000209
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
11779
11855
+
Arg
CCG
[ENA]
¡û
>W1711293017
LZYF01000235
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
6172
6248
+
Arg
CCG
[ENA]
¡û
>W1711293051
LZYG01000097
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
3078
3002
-
Arg
CCG
[ENA]
¡û
>W1711293084
LZYH01000305
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
4824
4900
+
Arg
CCG
[ENA]
¡û
>WENV181406669
OGCG01000817
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
13289
13365
+
Arg
CCG
[ENA]
¢þ
>C181130794
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
347923
347999
+
Arg
CCG
-
¡û
>W09134904
ACVD01000064
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
13371
13447
+
Arg
CCG
[ENA]
¡û
>C151007935
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
454920
454996
+
Arg
CCG
[Ensembl]
¡û
>C11100478
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
436905
436981
+
Arg
CCG
[Ensembl]
¡û
>W1611004673
LXQG01000068
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
618
542
-
Arg
CCG
[ENA]
¡û
Identical group No.280952 (25 seq.)
>W1710777630
LJBT01000005
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
32545
32621
+
Arg
CCG
[ENA]
¡û
>W1711010473
LQRJ01000045
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
32478
32554
+
Arg
CCG
[ENA]
¡û
>W1711168362
LVXZ01000166
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
7372
7448
+
Arg
CCG
[ENA]
¡û
>W1711169873
LVZL01000042
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
34910
34986
+
Arg
CCG
[ENA]
¡û
>W1711312166
MASQ01000081
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
8832
8756
-
Arg
CCG
[ENA]
¡û
>WENV181296463
OFHJ01040207
[OFHJ] soil metagenome; Clay
129
53
-
Arg
CCG
[ENA]
¢þ
>W141262904
CCCS020000023
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
280702
280626
-
Arg
CCG
[ENA]
¡û
>C08000422
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
2331088
2331015
-
Arg
CCG
[Ensembl]
¡û
>WENV170008368
AOMP01000634
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
29
105
+
Arg
CCG
[ENA]
¢þ
>WENV170008441
AOMP01005979
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
29
105
+
Arg
CCG
[ENA]
¢þ
>C191005136
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
672812
672736
-
Arg
CCG
-
¡û
>W141738848
JNNH01001019
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
516
440
-
Arg
CCG
[ENA]
¡û
>C09100375
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
2435884
2435808
-
Arg
CCG
[Ensembl]
¡û
>W1810257116
PQJK01000002
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
121694
121770
+
Arg
CCG
[ENA]
¡û
>W1810679293
QKQP01000005
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
261385
261309
-
Arg
CCG
[ENA]
¡û
>W10127961
AEFB01000147
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1407
1331
-
Arg
CCG
[ENA]
¡û
>C11100719
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
580685
580761
+
Arg
CCG
[Ensembl]
¡û
>W11135506
AEFB01000147
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1407
1331
-
Arg
CCG
[ENA]
¡û
>W11164293
AFJD01000016
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
30895
30819
-
Arg
CCG
[ENA]
¡û
>W1610627903
LIEB01000021
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
6592
6516
-
Arg
CCG
[ENA]
¡û
>W1610641816
LJBT01000005
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
32545
32621
+
Arg
CCG
[ENA]
¡û
>W1610858993
LQRJ01000045
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
32478
32554
+
Arg
CCG
[ENA]
¡û
>W1610978277
LVXZ01000166
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
7372
7448
+
Arg
CCG
[ENA]
¡û
>W1611057367
MASQ01000081
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
8832
8756
-
Arg
CCG
[ENA]
¡û
>W1710759030
LIEB01000021
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
6592
6516
-
Arg
CCG
[ENA]
¡û
Identical group No.322436 (13 seq.)
>W1711190231
LWRY01000015
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
17211
17135
-
Arg
CCG
[ENA]
¡û
>W1711190300
LWRZ01000011
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
11071
10995
-
Arg
CCG
[ENA]
¡û
>W1711190468
LWSA01000300
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
43508
43432
-
Arg
CCG
[ENA]
¡û
>W1711190485
LWSB01000018
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
81136
81212
+
Arg
CCG
[ENA]
¡û
>W1711190577
LWSC01000004
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
17211
17135
-
Arg
CCG
[ENA]
¡û
>W1711190642
LWSD01000005
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
59784
59860
+
Arg
CCG
[ENA]
¡û
>W1711293200
LZYI01000139
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
30177
30253
+
Arg
CCG
[ENA]
¡û
>W1711585824
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
2382901
2382825
-
Arg
CCG
[ENA]
¡û
>W141206763
AZMO01000004
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
78999
79075
+
Arg
CCG
[ENA]
¡û
>W141695550
JMEB01000085
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
7865
7789
-
Arg
CCG
[ENA]
¡û
>W1910831842
MXAV01000033
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
117879
117955
+
Arg
CCG
[ENA]
¡û
>W11168520
AFOH01000010
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
4512
4588
+
Arg
CCG
[ENA]
¡û
>W1710743711
LGYM01000036
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
152725
152649
-
Arg
CCG
[ENA]
¡û
Identical group No.361032 (8 seq.)
>W1710798656
LJTT01000133
Betaproteobacteria
Betaproteobacteria bacterium SG8_41 [LJTT]
5174
5098
-
Arg
CCG
[ENA]
¡û
>W1710799194
LJUK01000144
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
8659
8583
-
Arg
CCG
[ENA]
¡û
>W1710799773
LJVB01000101
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
6554
6478
-
Arg
CCG
[ENA]
¡û
>WENV180295616
OBIZ01187576
[OBIZ] soil metagenome; soil
85
161
+
Arg
CCG
[ENA]
¢þ
>WENV180350717
OBLQ010007739
[OBLQ] soil metagenome; soil
1911
1987
+
Arg
CCG
[ENA]
¢þ
>W1610662613
LJTT01000133
Betaproteobacteria
Betaproteobacteria bacterium SG8_41 [LJTT]
5174
5098
-
Arg
CCG
[ENA]
¡û
>W1610663151
LJUK01000144
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
8659
8583
-
Arg
CCG
[ENA]
¡û
>W1610663730
LJVB01000101
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
6554
6478
-
Arg
CCG
[ENA]
¡û
Identical group No.430938 (1 seq.)
>W131231787
AUIS01000022
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
7832
7908
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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