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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CCT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.322433 (9 seq.)
>W1711190255
LWRY01000053
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
12492
12416
-
Arg
CCT
[ENA]
¡û
>W1711190330
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
23188
23264
+
Arg
CCT
[ENA]
¡û
>W1711190434
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
4750
4674
-
Arg
CCT
[ENA]
¡û
>W1711190562
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
4782
4706
-
Arg
CCT
[ENA]
¡û
>W1711190610
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
10919
10843
-
Arg
CCT
[ENA]
¡û
>W1711190671
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
19003
19079
+
Arg
CCT
[ENA]
¡û
>W1711293196
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
4768
4692
-
Arg
CCT
[ENA]
¡û
>W141206819
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
4679
4603
-
Arg
CCT
[ENA]
¡û
>W1710743672
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
25727
25803
+
Arg
CCT
[ENA]
¡û
Identical group No.402070 (2 seq.)
>W10127974
AEFB01000308
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
948
872
-
Arg
CCT
[ENA]
¡û
>W11135519
AEFB01000308
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
948
872
-
Arg
CCT
[ENA]
¡û
Identical group No.415645 (2 seq.)
>W1710798663
LJTU01000020
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
2351
2275
-
Arg
CCT
[ENA]
¡û
>W1610662620
LJTU01000020
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
2351
2275
-
Arg
CCT
[ENA]
¡û
Identical group No.463083 (8 seq.)
>W141262938
CCCS020000038
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
31810
31735
-
Arg
CCT
[ENA]
¡û
>C08000436
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
696432
696360
-
Arg
CCT
[Ensembl]
¡û
>C191005125
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
1753894
1753819
-
Arg
CCT
-
¡û
>C09100414
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
519469
519394
-
Arg
CCT
[Ensembl]
¡û
>W1910831825
MXAV01000007
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
53846
53771
-
Arg
CCT
[ENA]
¡û
>W1810257140
PQJK01000008
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
37746
37671
-
Arg
CCT
[ENA]
¡û
>W10127979
AEFB01000615
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
371
296
-
Arg
CCT
[ENA]
¡û
>W11135524
AEFB01000615
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
371
296
-
Arg
CCT
[ENA]
¡û
Identical group No.629921 (1 seq.)
>W131231768
AUIS01000004
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
12976
12901
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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