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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CCT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458050 (10 seq.)
>W1711220215
LXQG01000170
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
2400
2325
-
Arg
CCT
[ENA]
¡û
>W1711292973
LZYE01000233
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
8523
8448
-
Arg
CCT
[ENA]
¡û
>W1711292994
LZYF01000024
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
37457
37532
+
Arg
CCT
[ENA]
¡û
>W1711293064
LZYG01000232
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
11832
11757
-
Arg
CCT
[ENA]
¡û
>WENV181406448
OGCG01000282
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
25583
25508
-
Arg
CCT
[ENA]
¢þ
>C181130840
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
423577
423502
-
Arg
CCT
-
¡û
>W09134907
ACVD01000065
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
11345
11270
-
Arg
CCT
[ENA]
¡û
>C151007978
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
526661
526586
-
Arg
CCT
[Ensembl]
¡û
>C11100519
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
510783
510708
-
Arg
CCT
[Ensembl]
¡û
>W1611004687
LXQG01000170
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
2400
2325
-
Arg
CCT
[ENA]
¡û
Identical group No.506148 (7 seq.)
>W1710777652
LJBT01000048
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
974
1049
+
Arg
CCT
[ENA]
¡û
>W1711010464
LQRJ01000024
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
19918
19993
+
Arg
CCT
[ENA]
¡û
>W1810679267
QKQP01000001
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
935930
936005
+
Arg
CCT
[ENA]
¡û
>W1610627922
LIEB01000054
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
999
924
-
Arg
CCT
[ENA]
¡û
>W1610641838
LJBT01000048
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
974
1049
+
Arg
CCT
[ENA]
¡û
>W1610858984
LQRJ01000024
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
19918
19993
+
Arg
CCT
[ENA]
¡û
>W1710759049
LIEB01000054
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
999
924
-
Arg
CCT
[ENA]
¡û
Identical group No.508433 (20 seq.)
>W1711168338
LVXZ01000067
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
19656
19731
+
Arg
CCT
[ENA]
¡û
>W1711169889
LVZL01000086
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
26877
26802
-
Arg
CCT
[ENA]
¡û
>W1711190268
LWRY01000146
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
6523
6598
+
Arg
CCT
[ENA]
¡û
>W1711190387
LWRZ01000329
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
6522
6597
+
Arg
CCT
[ENA]
¡û
>W1711190411
LWSA01000139
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
6522
6597
+
Arg
CCT
[ENA]
¡û
>W1711190567
LWSB01000245
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
6523
6598
+
Arg
CCT
[ENA]
¡û
>W1711190582
LWSC01000016
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
1792
1717
-
Arg
CCT
[ENA]
¡û
>W1711190739
LWSD01000347
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
1982
2057
+
Arg
CCT
[ENA]
¡û
>W1711293197
LZYI01000129
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
8102
8027
-
Arg
CCT
[ENA]
¡û
>W1711585840
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
593406
593331
-
Arg
CCT
[ENA]
¡û
>W141206781
AZMO01000031
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
16864
16939
+
Arg
CCT
[ENA]
¡û
>WENV170008359
AOMP01000276
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
4318
4243
-
Arg
CCT
[ENA]
¢þ
>WENV170008445
AOMP01006547
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
66
141
+
Arg
CCT
[ENA]
¢þ
>WENV170008536
AOMQ01002336
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
1220
1295
+
Arg
CCT
[ENA]
¢þ
>W141695552
JMEB01000100
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
2782
2707
-
Arg
CCT
[ENA]
¡û
>C11100757
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
998471
998396
-
Arg
CCT
[Ensembl]
¡û
>W11164296
AFJD01000022
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
19315
19390
+
Arg
CCT
[ENA]
¡û
>W11168550
AFOH01000124
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
12105
12030
-
Arg
CCT
[ENA]
¡û
>W1610978253
LVXZ01000067
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
19656
19731
+
Arg
CCT
[ENA]
¡û
>W1710743680
LGYM01000020
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
406941
407016
+
Arg
CCT
[ENA]
¡û
Identical group No.508606 (7 seq.)
>W1710799199
LJUK01000183
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
4803
4728
-
Arg
CCT
[ENA]
¡û
>W1711403026
MFSP01000196
Unclassified
Candidatus Muproteobacteria bacterium RBG_16_60_9 [MFSP]
13473
13548
+
Arg
CCT
[ENA]
¡û
>WENV180269110
OBEQ012033987
[OBEQ] groundwater metagenome; groundwater
783
708
-
Arg
CCT
[ENA]
¢þ
>WENV180295679
OBIZ01225868
[OBIZ] soil metagenome; soil
31
106
+
Arg
CCT
[ENA]
¢þ
>WENV180350635
OBLQ010005004
[OBLQ] soil metagenome; soil
4621
4546
-
Arg
CCT
[ENA]
¢þ
>WENV183678023
ORJL011827077
[ORJL] groundwater metagenome; groundwater
951
876
-
Arg
CCT
[ENA]
¢þ
>W1610663156
LJUK01000183
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
4803
4728
-
Arg
CCT
[ENA]
¡û
Identical group No.568088 (3 seq.)
>W1711312150
MASQ01000046
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
29910
29985
+
Arg
CCT
[ENA]
¡û
>WENV181296152
OFHJ01010696
[OFHJ] soil metagenome; Clay
184
109
-
Arg
CCT
[ENA]
¢þ
>W1611057351
MASQ01000046
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
29910
29985
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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