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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CGA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20125 (13 seq.)
>W1711190289
LWRY01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
8993
8902
-
Ser
CGA
[ENA]
¡û
>W1711190630
LWSC01000243
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
8993
8902
-
Ser
CGA
[ENA]
¡û
>W1711292950
LZYE01000007
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
25761
25852
+
Ser
CGA
[ENA]
¡û
>W1711292999
LZYF01000030
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
25756
25847
+
Ser
CGA
[ENA]
¡û
>W1711293054
LZYG01000156
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
948
857
-
Ser
CGA
[ENA]
¡û
>WENV181406519
OGCG01000385
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
1096
1187
+
Ser
CGA
[ENA]
¢þ
>W09134916
ACVD01000074
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
3370
3461
+
Ser
CGA
[ENA]
¡û
>W141695551
JMEB01000095
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
54558
54467
-
Ser
CGA
[ENA]
¡û
>W1910831850
MXAV01000035
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
45126
45217
+
Ser
CGA
[ENA]
¡û
>W1810608459
QGTJ01000001
Gammaproteobacteria
Plasticicumulans acidivorans DSM 23606 [QGTJ]
583227
583136
-
Ser
CGA
[ENA]
¡û
>C151007944
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
984930
985021
+
Ser
CGA
[Ensembl]
¡û
>W11168551
AFOH01000130
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
12012
11921
-
Ser
CGA
[ENA]
¡û
>W1710743685
LGYM01000026
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
27909
28000
+
Ser
CGA
[ENA]
¡û
Identical group No.31083 (19 seq.)
>W1710777658
LJBT01000088
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
88408
88318
-
Ser
CGA
[ENA]
¡û
>W1711010462
LQRJ01000019
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
1426
1336
-
Ser
CGA
[ENA]
¡û
>W1711169870
LVZL01000035
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
8578
8488
-
Ser
CGA
[ENA]
¡û
>W1711312180
MASQ01000098
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
36565
36475
-
Ser
CGA
[ENA]
¡û
>W141262890
CCCS020000001
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
56267
56357
+
Ser
CGA
[ENA]
¡û
>C08000429
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
1686344
1686257
-
Ser
CGA
[Ensembl]
¡û
>WENV170008624
AOMQ01008700
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
94
4
-
Ser
CGA
[ENA]
¢þ
>C191005143
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
212146
212056
-
Ser
CGA
-
¡û
>W141738832
JNNH01000193
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
2291
2201
-
Ser
CGA
[ENA]
¡û
>C09100382
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1805237
1805147
-
Ser
CGA
[Ensembl]
¡û
>W1810257106
PQJK01000001
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
152370
152460
+
Ser
CGA
[ENA]
¡û
>W1810679303
QKQP01000012
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
183119
183209
+
Ser
CGA
[ENA]
¡û
>C11100746
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
2165846
2165756
-
Ser
CGA
[Ensembl]
¡û
>W11164264
AFJD01000004
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
137075
137165
+
Ser
CGA
[ENA]
¡û
>W1610627914
LIEB01000038
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
45323
45413
+
Ser
CGA
[ENA]
¡û
>W1610641844
LJBT01000088
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
88408
88318
-
Ser
CGA
[ENA]
¡û
>W1610858982
LQRJ01000019
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
1426
1336
-
Ser
CGA
[ENA]
¡û
>W1611057381
MASQ01000098
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
36565
36475
-
Ser
CGA
[ENA]
¡û
>W1710759041
LIEB01000038
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
45323
45413
+
Ser
CGA
[ENA]
¡û
Identical group No.58421 (6 seq.)
>W1710798754
LJTW01000358
Gammaproteobacteria
Thiotrichales bacterium SG8_50 [LJTW]
4336
4425
+
Ser
CGA
[ENA]
¡û
>W1710799186
LJUK01000104
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
5173
5262
+
Ser
CGA
[ENA]
¡û
>W1710799745
LJVB01000002
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
40210
40121
-
Ser
CGA
[ENA]
¡û
>W1610662711
LJTW01000358
Gammaproteobacteria
Thiotrichales bacterium SG8_50 [LJTW]
4336
4425
+
Ser
CGA
[ENA]
¡û
>W1610663143
LJUK01000104
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
5173
5262
+
Ser
CGA
[ENA]
¡û
>W1610663702
LJVB01000002
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
40210
40121
-
Ser
CGA
[ENA]
¡û
Identical group No.80713 (3 seq.)
>W1711168372
LVXZ01000293
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
3734
3646
-
Ser
CGA
[ENA]
¡û
>WENV181296410
OFHJ01033730
[OFHJ] soil metagenome; Clay
203
291
+
Ser
CGA
[ENA]
¢þ
>W1610978287
LVXZ01000293
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
3734
3646
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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