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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CGG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242109 (1 seq.)
>C09100396
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1033163
1033086
-
Pro
CGG
[Ensembl]
¡û
Identical group No.324372 (7 seq.)
>W1711190340
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
4489
4565
+
Pro
CGG
[ENA]
¡û
>W1711190460
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
8685
8609
-
Pro
CGG
[ENA]
¡û
>W1711190523
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
7962
8038
+
Pro
CGG
[ENA]
¡û
>W1711190733
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
5510
5586
+
Pro
CGG
[ENA]
¡û
>W1711293142
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
8703
8627
-
Pro
CGG
[ENA]
¡û
>W141206748
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
137251
137327
+
Pro
CGG
[ENA]
¡û
>W141695577
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
15793
15717
-
Pro
CGG
[ENA]
¡û
Identical group No.430937 (1 seq.)
>W131231777
AUIS01000013
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
18855
18779
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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