This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CTG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.781010 (22 seq.)
>W1711168363
LVXZ01000166
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
1745
1672
-
Gln
CTG
[ENA]
¡û
>W1711169874
LVZL01000042
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
29350
29277
-
Gln
CTG
[ENA]
¡û
>W1711220181
LXQG01000025
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
9653
9726
+
Gln
CTG
[ENA]
¡û
>W1711292972
LZYE01000232
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
184
111
-
Gln
CTG
[ENA]
¡û
>W1711292995
LZYF01000024
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
48985
49058
+
Gln
CTG
[ENA]
¡û
>W1711293065
LZYG01000232
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
184
111
-
Gln
CTG
[ENA]
¡û
>W1711293089
LZYH01000406
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
66
139
+
Gln
CTG
[ENA]
¡û
>W1711312163
MASQ01000081
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
14536
14609
+
Gln
CTG
[ENA]
¡û
>WENV181296325
OFHJ01025688
[OFHJ] soil metagenome; Clay
227
300
+
Gln
CTG
[ENA]
¢þ
>WENV181406449
OGCG01000282
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
14084
14011
-
Gln
CTG
[ENA]
¢þ
>W141262901
CCCS020000023
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
286363
286436
+
Gln
CTG
[ENA]
¡û
>WENV170008442
AOMP01006183
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
179
106
-
Gln
CTG
[ENA]
¢þ
>WENV170008447
AOMP01006955
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
93
20
-
Gln
CTG
[ENA]
¢þ
>C181130841
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
410133
410060
-
Gln
CTG
-
¡û
>W09134905
ACVD01000064
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
73501
73428
-
Gln
CTG
[ENA]
¡û
>C151007979
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
515050
514977
-
Gln
CTG
[Ensembl]
¡û
>C11100520
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
496959
496886
-
Gln
CTG
[Ensembl]
¡û
>C11100758
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
575125
575052
-
Gln
CTG
[Ensembl]
¡û
>W11164290
AFJD01000016
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
36455
36528
+
Gln
CTG
[ENA]
¡û
>W1610978278
LVXZ01000166
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
1745
1672
-
Gln
CTG
[ENA]
¡û
>W1611004653
LXQG01000025
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
9653
9726
+
Gln
CTG
[ENA]
¡û
>W1611057364
MASQ01000081
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
14536
14609
+
Gln
CTG
[ENA]
¡û
Identical group No.782079 (14 seq.)
>W1710777631
LJBT01000005
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
26982
26909
-
Gln
CTG
[ENA]
¡û
>W1711010474
LQRJ01000045
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
26915
26842
-
Gln
CTG
[ENA]
¡û
>C08000415
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
2336651
2336724
+
Gln
CTG
[Ensembl]
¡û
>C191005103
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
678385
678458
+
Gln
CTG
-
¡û
>W141738858
JNNH01001728
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
394
467
+
Gln
CTG
[ENA]
¡û
>C09100368
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
2441447
2441520
+
Gln
CTG
[Ensembl]
¡û
>W1810257122
PQJK01000002
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
116121
116048
-
Gln
CTG
[ENA]
¡û
>W1810679287
QKQP01000005
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
266948
267021
+
Gln
CTG
[ENA]
¡û
>W10127984
AEFB01000744
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1568
1641
+
Gln
CTG
[ENA]
¡û
>W11135529
AEFB01000744
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1568
1641
+
Gln
CTG
[ENA]
¡û
>W1610627900
LIEB01000021
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
12155
12228
+
Gln
CTG
[ENA]
¡û
>W1610641817
LJBT01000005
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
26982
26909
-
Gln
CTG
[ENA]
¡û
>W1610858994
LQRJ01000045
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
26915
26842
-
Gln
CTG
[ENA]
¡û
>W1710759027
LIEB01000021
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
12155
12228
+
Gln
CTG
[ENA]
¡û
Identical group No.794684 (20 seq.)
>W131045457
AMRL01000037
Alphaproteobacteria
Oceanibaculum indicum P24 [AMRL]
9244
9171
-
Gln
CTG
[ENA]
¡û
>W1710991238
LPXN01000098
Alphaproteobacteria
Oceanibaculum pacificum [LPXN]
12312
12385
+
Gln
CTG
[ENA]
¡û
>W131218655
ATXX01000074
Gammaproteobacteria
Methylocaldum szegediense O-12 [ATXX]
37249
37176
-
Gln
CTG
[ENA]
¡û
>W131231726
AUIR01000006
Alphaproteobacteria
Thalassobaculum salexigens DSM 19539 [AUIR]
396882
396809
-
Gln
CTG
[ENA]
¡û
>W131231797
AUIS01000041
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
5750
5823
+
Gln
CTG
[ENA]
¡û
>W1711628160
MPOB01000008
Alphaproteobacteria
Oceanibaculum nanhaiense L54-1-50 [MPOB]
96342
96415
+
Gln
CTG
[ENA]
¡û
>W1711687777
MSCV01000019
Gammaproteobacteria
Methylocaldum sp. 14B [MSCV]
107047
107120
+
Gln
CTG
[ENA]
¡û
>W1711744226
MUGL01000060
Gammaproteobacteria
Methylocaldum sp. SAD2 [MUGL]
106234
106307
+
Gln
CTG
[ENA]
¡û
>WENV180308450
OBJR01009733
[OBJR] soil metagenome; soil
188
261
+
Gln
CTG
[ENA]
¢þ
>WENV180377815
OBON01140516
[OBON] marine metagenome; sea water
163
90
-
Gln
CTG
[ENA]
¢þ
>WENV180592167
OCOV01209623
[OCOV] marine metagenome; ENVO:01000301
240
167
-
Gln
CTG
[ENA]
¢þ
>W08004039
ABHC01000027
Alphaproteobacteria
alpha proteobacterium BAL199 [ABHC]
17651
17581
-
Gln
CTG
[ENA]
¡û
>WENV170964156
MRWG01003994
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
5961
5888
-
Gln
CTG
[ENA]
¢þ
>WENV170964659
MRWG01027843
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
837
909
+
Gln
CTG
[ENA]
¢þ
>WENV170964895
MRWG01067228
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
297
369
+
Gln
CTG
[ENA]
¢þ
>WENV170964905
MRWG01068402
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
16
89
+
Gln
CTG
[ENA]
¢þ
>C191000721
AP017928
Gammaproteobacteria
Methylocaldum marinum S8 [AP017928]
4413830
4413903
+
Gln
CTG
-
¡û
>W1911708729
QOZR01000003
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60014 [QOZR]
380436
380509
+
Gln
CTG
[ENA]
¡û
>W1610845910
LPXN01000098
Alphaproteobacteria
Oceanibaculum pacificum [LPXN]
12312
12385
+
Gln
CTG
[ENA]
¡û
>W1710515564
FNBW01000016
Alphaproteobacteria
Thalassobaculum litoreum DSM 18839 [FNBW]
136506
136579
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK