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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CTT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462524 (55 seq.)
>W1710777627
LJBT01000003
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
11539
11614
+
Lys
CTT
[ENA]
¡û
>W1711010495
LQRJ01000070
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
49669
49594
-
Lys
CTT
[ENA]
¡û
>W1711168347
LVXZ01000092
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
8277
8202
-
Lys
CTT
[ENA]
¡û
>W1711169871
LVZL01000036
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
10065
9990
-
Lys
CTT
[ENA]
¡û
>W1711190225
LWRY01000003
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
7403
7328
-
Lys
CTT
[ENA]
¡û
>W1711190379
LWRZ01000235
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
7839
7914
+
Lys
CTT
[ENA]
¡û
>W1711190446
LWSA01000189
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
7854
7929
+
Lys
CTT
[ENA]
¡û
>W1711190531
LWSB01000097
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
23710
23785
+
Lys
CTT
[ENA]
¡û
>W1711190634
LWSC01000263
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
1495
1570
+
Lys
CTT
[ENA]
¡û
>W1711190707
LWSD01000224
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
7837
7912
+
Lys
CTT
[ENA]
¡û
>W1711293198
LZYI01000132
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
6620
6695
+
Lys
CTT
[ENA]
¡û
>W1711312161
MASQ01000077
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
2910
2835
-
Lys
CTT
[ENA]
¡û
>W1711585810
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
1345787
1345862
+
Lys
CTT
[ENA]
¡û
>W131243741
CAPG01000027
Bacillota
Bacillus sp. AP8 [CAPG]
692
620
-
Lys
CTT
[ENA]
¡û
>W141054014
AODD01000013
Bacillota
Listeria grandensis FSL F6-971 [AODD]
112547
112475
-
Lys
CTT
[ENA]
¡û
>W141054080
AODE01000031
Bacillota
Listeria cornellensis FSL F6-969 [AODE]
50354
50282
-
Lys
CTT
[ENA]
¡û
>W141054390
AODJ01000024
Bacillota
Listeria weihenstephanensis FSL R9-0317 [AODJ]
11937
11865
-
Lys
CTT
[ENA]
¡û
>WENV181295996
OFHJ01003764
[OFHJ] soil metagenome; Clay
1651
1576
-
Lys
CTT
[ENA]
¢þ
>WENV181406521
OGCG01000385
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
12309
12234
-
Lys
CTT
[ENA]
¢þ
>W141206821
AZMO01000124
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
8594
8519
-
Lys
CTT
[ENA]
¡û
>W141262931
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
122532
122457
-
Lys
CTT
[ENA]
¡û
>C08000431
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
1586688
1586616
-
Lys
CTT
[Ensembl]
¡û
>WENV170008639
AOMQ01011013
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
78
3
-
Lys
CTT
[ENA]
¢þ
>C181130835
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
1207270
1207195
-
Lys
CTT
-
¡û
>C191005120
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
2843030
2842955
-
Lys
CTT
-
¡û
>C191008679
CP011102
Bacillota
Listeria weihenstephanensis WS 4560 [CP011102]
3229865
3229793
-
Lys
CTT
-
¡û
>W09134918
ACVD01000076
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
274
199
-
Lys
CTT
[ENA]
¡û
>W141738809
JNNH01000021
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
56452
56377
-
Lys
CTT
[ENA]
¡û
>W141738849
JNNH01001036
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
2428
2353
-
Lys
CTT
[ENA]
¡û
>W1910178377
BJEY01000003
Bacillota
Listeria newyorkensis Ln2-1 [BJEY]
156602
156674
+
Lys
CTT
[ENA]
¡û
>C09100384
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1705581
1705506
-
Lys
CTT
[Ensembl]
¡û
>W1910777221
MPDH01000002
Bacillota
Listeria newyorkensis F1604011-044 [MPDH]
216054
216126
+
Lys
CTT
[ENA]
¡û
>W1910831857
MXAV01000044
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
165072
164997
-
Lys
CTT
[ENA]
¡û
>W1911709402
QPKR01000002
Bacillota
Listeria sp. SHR_NRA_18 [QPKR]
115879
115807
-
Lys
CTT
[ENA]
¡û
>W1911774767
QXMC01000002
Bacillota
Listeria monocytogenes PNUSAL000442 [QXMC]
358096
358168
+
Lys
CTT
[ENA]
¡û
>W1810257108
PQJK01000001
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
269502
269577
+
Lys
CTT
[ENA]
¡û
>W1810679305
QKQP01000012
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
285516
285591
+
Lys
CTT
[ENA]
¡û
>C151007973
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
1042695
1042620
-
Lys
CTT
[Ensembl]
¡û
>W1510001369
AZHN01000022
Bacillota
Listeria newyorkensis 1903 [AZHN]
17571
17646
+
Lys
CTT
[ENA]
¡û
>W10127995
AEFB01001076
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
97
22
-
Lys
CTT
[ENA]
¡û
>C11100514
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
1308823
1308748
-
Lys
CTT
[Ensembl]
¡û
>C11100749
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
1726538
1726463
-
Lys
CTT
[Ensembl]
¡û
>W1510650330
CVQX01000025
Bacillota
Bacillus testis SIT10 [CVQX]
115356
115428
+
Lys
CTT
[ENA]
¡û
>W1511220988
JNEZ01000023
Bacillota
Listeriaceae bacterium FSL A5-0209 [JNEZ]
92102
92030
-
Lys
CTT
[ENA]
¡û
>W1511221140
JNFB01000045
Bacillota
Listeria newyorkensis FSL M6-0635 [JNFB]
150298
150370
+
Lys
CTT
[ENA]
¡û
>W11135540
AEFB01001076
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
97
22
-
Lys
CTT
[ENA]
¡û
>W11164287
AFJD01000012
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
109888
109963
+
Lys
CTT
[ENA]
¡û
>W11168532
AFOH01000049
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
2171
2096
-
Lys
CTT
[ENA]
¡û
>W1610627880
LIEB01000001
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
11513
11588
+
Lys
CTT
[ENA]
¡û
>W1610641813
LJBT01000003
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
11539
11614
+
Lys
CTT
[ENA]
¡û
>W1610859015
LQRJ01000070
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
49669
49594
-
Lys
CTT
[ENA]
¡û
>W1610978262
LVXZ01000092
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
8277
8202
-
Lys
CTT
[ENA]
¡û
>W1611057362
MASQ01000077
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
2910
2835
-
Lys
CTT
[ENA]
¡û
>W1710743705
LGYM01000035
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
308411
308486
+
Lys
CTT
[ENA]
¡û
>W1710759007
LIEB01000001
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
11513
11588
+
Lys
CTT
[ENA]
¡û
Identical group No.480937 (6 seq.)
>W1710799191
LJUK01000117
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
1925
2000
+
Lys
CTT
[ENA]
¡û
>W1710799763
LJVB01000066
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
1880
1955
+
Lys
CTT
[ENA]
¡û
>WENV180351252
OBLQ010035955
[OBLQ] soil metagenome; soil
1284
1209
-
Lys
CTT
[ENA]
¢þ
>C181000948
AP014936
Gammaproteobacteria
Sulfurifustis variabilis skN76 [AP014936]
1301964
1302039
+
Lys
CTT
-
¡û
>W1610663148
LJUK01000117
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
1925
2000
+
Lys
CTT
[ENA]
¡û
>W1610663720
LJVB01000066
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
1880
1955
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK