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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GAA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155510 (1 seq.)
>W143017353
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
16870
16948
+
Phe
GAA
[ENA]
¡û
Identical group No.288688 (1 seq.)
>C09100409
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1027730
1027655
-
Phe
GAA
[Ensembl]
¡û
Identical group No.317914 (9 seq.)
>W1711190252
LWRY01000053
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
13761
13686
-
Phe
GAA
[ENA]
¡û
>W1711190327
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
21919
21994
+
Phe
GAA
[ENA]
¡û
>W1711190431
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
6019
5944
-
Phe
GAA
[ENA]
¡û
>W1711190559
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
6051
5976
-
Phe
GAA
[ENA]
¡û
>W1711190607
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
12188
12113
-
Phe
GAA
[ENA]
¡û
>W1711190668
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
17734
17809
+
Phe
GAA
[ENA]
¡û
>W1711293193
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
6037
5962
-
Phe
GAA
[ENA]
¡û
>W141206816
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
5948
5873
-
Phe
GAA
[ENA]
¡û
>W1710743669
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
24458
24533
+
Phe
GAA
[ENA]
¡û
Identical group No.319210 (6 seq.)
>W1711190372
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
9819
9894
+
Phe
GAA
[ENA]
¡û
>W1711190514
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
2499
2574
+
Phe
GAA
[ENA]
¡û
>W1711190724
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
47
122
+
Phe
GAA
[ENA]
¡û
>W1711293133
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
14166
14091
-
Phe
GAA
[ENA]
¡û
>W141206739
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
131788
131863
+
Phe
GAA
[ENA]
¡û
>W141695568
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
21588
21513
-
Phe
GAA
[ENA]
¡û
Identical group No.343096 (4 seq.)
>W1710799193
LJUK01000123
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
2229
2304
+
Phe
GAA
[ENA]
¡û
>W1710799752
LJVB01000021
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
385
460
+
Phe
GAA
[ENA]
¡û
>W1610663150
LJUK01000123
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
2229
2304
+
Phe
GAA
[ENA]
¡û
>W1610663709
LJVB01000021
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
385
460
+
Phe
GAA
[ENA]
¡û
Identical group No.368439 (2 seq.)
>W10127953
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
318
243
-
Phe
GAA
[ENA]
¡û
>W11135498
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
318
243
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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