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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GAT
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276696 (16 seq.)
>W1711220204
LXQG01000088
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
1690
1766
+
Ile
GAT
[ENA]
¡û
>W1711292955
LZYE01000052
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
4682
4758
+
Ile
GAT
[ENA]
¡û
>W1711293001
LZYF01000033
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
4775
4851
+
Ile
GAT
[ENA]
¡û
>W1711293043
LZYG01000056
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
21825
21901
+
Ile
GAT
[ENA]
¡û
>W1711293114
LZYH01001011
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
1689
1765
+
Ile
GAT
[ENA]
¡û
>WENV181407221
OGCG01010968
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
2285
2209
-
Ile
GAT
[ENA]
¢þ
>C181130818
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
2660289
2660213
-
Ile
GAT
-
¡û
>C181130820
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
2655165
2655089
-
Ile
GAT
-
¡û
>C181130824
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
2338039
2337963
-
Ile
GAT
-
¡û
>C181130826
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
2331822
2331746
-
Ile
GAT
-
¡û
>W09134894
ACVD01000050
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
72949
72873
-
Ile
GAT
[ENA]
¡û
>C151007958
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
2683492
2683416
-
Ile
GAT
[Ensembl]
¡û
>C151007962
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
2371932
2371856
-
Ile
GAT
[Ensembl]
¡û
>C11100501
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
2840264
2840188
-
Ile
GAT
[Ensembl]
¡û
>C11100505
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
2528310
2528234
-
Ile
GAT
[Ensembl]
¡û
>W1611004676
LXQG01000088
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
1690
1766
+
Ile
GAT
[ENA]
¡û
Identical group No.280976 (42 seq.)
>W1710777653
LJBT01000078
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
568
644
+
Ile
GAT
[ENA]
¡û
>W1711010503
LQRJ01000091
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
1624
1700
+
Ile
GAT
[ENA]
¡û
>W1711168331
LVXZ01000022
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
13750
13826
+
Ile
GAT
[ENA]
¡û
>W1711169880
LVZL01000063
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
22236
22160
-
Ile
GAT
[ENA]
¡û
>W1711190258
LWRY01000091
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
6509
6585
+
Ile
GAT
[ENA]
¡û
>W1711190332
LWRZ01000040
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
6895
6971
+
Ile
GAT
[ENA]
¡û
>W1711190401
LWSA01000046
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
13655
13731
+
Ile
GAT
[ENA]
¡û
>W1711190496
LWSB01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
62936
63012
+
Ile
GAT
[ENA]
¡û
>W1711190613
LWSC01000090
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
29496
29420
-
Ile
GAT
[ENA]
¡û
>W1711190673
LWSD01000059
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
21438
21514
+
Ile
GAT
[ENA]
¡û
>W1711293166
LZYI01000072
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
29510
29434
-
Ile
GAT
[ENA]
¡û
>W1711312147
MASQ01000023
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
1689
1765
+
Ile
GAT
[ENA]
¡û
>W1711585794
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
102917
102993
+
Ile
GAT
[ENA]
¡û
>W1711585801
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
417627
417703
+
Ile
GAT
[ENA]
¡û
>WENV181295970
OFHJ01003042
[OFHJ] soil metagenome; Clay
3193
3269
+
Ile
GAT
[ENA]
¢þ
>W141206790
AZMO01000052
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
27295
27371
+
Ile
GAT
[ENA]
¡û
>W141262898
CCCS020000015
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
1689
1765
+
Ile
GAT
[ENA]
¡û
>C08000398
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
513310
513386
+
Ile
GAT
[Ensembl]
¡û
>C08000419
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
2669584
2669511
-
Ile
GAT
[Ensembl]
¡û
>WENV170008350
AOMP01000217
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
3556
3480
-
Ile
GAT
[ENA]
¢þ
>WENV170008476
AOMQ01000142
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
3553
3477
-
Ile
GAT
[ENA]
¢þ
>C191005107
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
1565870
1565946
+
Ile
GAT
-
¡û
>C191005133
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
1017982
1017906
-
Ile
GAT
-
¡û
>W141738842
JNNH01000936
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
1590
1666
+
Ile
GAT
[ENA]
¡û
>C09100351
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
334792
334868
+
Ile
GAT
[Ensembl]
¡û
>C09100372
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
2769745
2769669
-
Ile
GAT
[Ensembl]
¡û
>W1910831820
MXAV01000004
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
221164
221240
+
Ile
GAT
[ENA]
¡û
>W1810679274
QKQP01000001
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
1233367
1233291
-
Ile
GAT
[ENA]
¡û
>W1810679290
QKQP01000005
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
598955
598879
-
Ile
GAT
[ENA]
¡û
>W10128002
AEFB01001296
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
3520
3444
-
Ile
GAT
[ENA]
¡û
>C11100731
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
3023928
3023852
-
Ile
GAT
[Ensembl]
¡û
>C11100738
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
2641781
2641705
-
Ile
GAT
[Ensembl]
¡û
>W11135547
AEFB01001296
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
3520
3444
-
Ile
GAT
[ENA]
¡û
>W11164294
AFJD01000017
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
25442
25518
+
Ile
GAT
[ENA]
¡û
>W11168545
AFOH01000120
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
2069
2145
+
Ile
GAT
[ENA]
¡û
>W1610627912
LIEB01000036
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
1624
1700
+
Ile
GAT
[ENA]
¡û
>W1610641839
LJBT01000078
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
568
644
+
Ile
GAT
[ENA]
¡û
>W1610859023
LQRJ01000091
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
1624
1700
+
Ile
GAT
[ENA]
¡û
>W1610978246
LVXZ01000022
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
13750
13826
+
Ile
GAT
[ENA]
¡û
>W1611057348
MASQ01000023
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
1689
1765
+
Ile
GAT
[ENA]
¡û
>W1710743674
LGYM01000010
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
3496
3420
-
Ile
GAT
[ENA]
¡û
>W1710759039
LIEB01000036
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
1624
1700
+
Ile
GAT
[ENA]
¡û
Identical group No.361033 (2 seq.)
>W1710799779
LJVB01000126
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
2856
2780
-
Ile
GAT
[ENA]
¡û
>W1610663736
LJVB01000126
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
2856
2780
-
Ile
GAT
[ENA]
¡û
Identical group No.430995 (2 seq.)
>W131231779
AUIS01000016
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
3425
3349
-
Ile
GAT
[ENA]
¡û
>W131231794
AUIS01000036
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
3425
3349
-
Ile
GAT
[ENA]
¡û
Identical group No.462522 (1 seq.)
>C09300008
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1028952
1028877
-
Ile
GAT
[Ensembl]
¡û
Identical group No.511223 (6 seq.)
>W143004115
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
135008
135083
+
Ile
GAT
[ENA]
¡û
>W1730023179
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
2246
2321
+
Ile
GAT
[ENA]
¡û
>W1730023192
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
10928
10853
-
Ile
GAT
[ENA]
¡û
>W1730023198
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
5719
5794
+
Ile
GAT
[ENA]
¡û
>W1730023221
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
3267
3342
+
Ile
GAT
[ENA]
¡û
>W1730025104
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
10946
10871
-
Ile
GAT
[ENA]
¡û
Identical group No.614594 (1 seq.)
>W143016598
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
18034
17959
-
Ile
GAT
[ENA]
¡û
Identical group No.686596 (9 seq.)
>W143004122
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
6596
6522
-
Ile
GAT
[ENA]
¡û
>W1730013215
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
23810
23884
+
Ile
GAT
[ENA]
¡û
>W1730023172
LWRY01000053
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
14409
14335
-
Ile
GAT
[ENA]
¡û
>W1730023177
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
21271
21345
+
Ile
GAT
[ENA]
¡û
>W1730023191
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
6667
6593
-
Ile
GAT
[ENA]
¡û
>W1730023205
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
6699
6625
-
Ile
GAT
[ENA]
¡û
>W1730023211
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
12836
12762
-
Ile
GAT
[ENA]
¡û
>W1730023215
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
17086
17160
+
Ile
GAT
[ENA]
¡û
>W1730025111
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
6685
6611
-
Ile
GAT
[ENA]
¡û
Identical group No.741440 (2 seq.)
>W10127945
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1727
1653
-
Ile
GAT
[ENA]
¡û
>W11135490
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1727
1653
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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