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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319215 (7 seq.)
>W1711190345
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
7815
7890
+
Ala
GGC
[ENA]
¡û
>W1711190465
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
5359
5284
-
Ala
GGC
[ENA]
¡û
>W1711190528
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
11288
11363
+
Ala
GGC
[ENA]
¡û
>W1711190676
LWSD01000073
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
17067
16992
-
Ala
GGC
[ENA]
¡û
>W1711293147
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
5377
5302
-
Ala
GGC
[ENA]
¡û
>W141206753
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
140577
140652
+
Ala
GGC
[ENA]
¡û
>W141695582
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
12469
12394
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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