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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GTC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183592 (1 seq.)
>C09100399
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1032802
1032726
-
Asp
GTC
[Ensembl]
¡û
Identical group No.209778 (9 seq.)
>W1711190276
LWRY01000155
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
6370
6294
-
Asp
GTC
[ENA]
¡û
>W1711190315
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
20227
20303
+
Asp
GTC
[ENA]
¡û
>W1711190419
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
7711
7635
-
Asp
GTC
[ENA]
¡û
>W1711190547
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
7743
7667
-
Asp
GTC
[ENA]
¡û
>W1711190595
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
13880
13804
-
Asp
GTC
[ENA]
¡û
>W1711190656
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
16042
16118
+
Asp
GTC
[ENA]
¡û
>W1711293181
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
7729
7653
-
Asp
GTC
[ENA]
¡û
>W141206804
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
7640
7564
-
Asp
GTC
[ENA]
¡û
>W1710743657
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
22766
22842
+
Asp
GTC
[ENA]
¡û
Identical group No.423337 (5 seq.)
>W1711190357
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
6456
6530
+
Asp
GTC
[ENA]
¡û
>W1711190709
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
3285
3211
-
Asp
GTC
[ENA]
¡û
>W1711293118
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
17529
17455
-
Asp
GTC
[ENA]
¡û
>W141206724
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
128425
128499
+
Asp
GTC
[ENA]
¡û
>W141695553
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
24942
24868
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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