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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GTT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.317909 (9 seq.)
>W1711190270
LWRY01000155
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
7558
7483
-
Asn
GTT
[ENA]
¡û
>W1711190309
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
19039
19114
+
Asn
GTT
[ENA]
¡û
>W1711190413
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
8899
8824
-
Asn
GTT
[ENA]
¡û
>W1711190541
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
8931
8856
-
Asn
GTT
[ENA]
¡û
>W1711190589
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
15068
14993
-
Asn
GTT
[ENA]
¡û
>W1711190650
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
14854
14929
+
Asn
GTT
[ENA]
¡û
>W1711293175
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
8917
8842
-
Asn
GTT
[ENA]
¡û
>W141206798
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
8828
8753
-
Asn
GTT
[ENA]
¡û
>W1710743651
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
21578
21653
+
Asn
GTT
[ENA]
¡û
Identical group No.403557 (1 seq.)
>C09100390
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1034384
1034310
-
Asn
GTT
[Ensembl]
¡û
Identical group No.423338 (6 seq.)
>W1711190359
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
7230
7304
+
Asn
GTT
[ENA]
¡û
>W1711190570
LWSB01000258
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
750
824
+
Asn
GTT
[ENA]
¡û
>W1711190711
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
2511
2437
-
Asn
GTT
[ENA]
¡û
>W1711293120
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
16755
16681
-
Asn
GTT
[ENA]
¡û
>W141206726
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
129199
129273
+
Asn
GTT
[ENA]
¡û
>W141695555
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
24169
24095
-
Asn
GTT
[ENA]
¡û
Identical group No.476432 (1 seq.)
>W141738811
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
9093
9167
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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